View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7691_low_31 (Length: 242)
Name: NF7691_low_31
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 7439692 - 7439852
Alignment:
| Q |
1 |
tccaatcagataaaaaattcatgacttttaccaccatactagcattttttgaatgacccctcaactcaactaaaactcaactttttcatccttctgggtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7439692 |
tccaatcagataaaaaattcatgacttttaccaccatactatcatgttttgaatgacccctcaactcaactaaaactcaactttttcatccttctgggtt |
7439791 |
T |
|
| Q |
101 |
ctggctatttcaaacagccactaggtaaattagtgattatgccacttccactttctttttc |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7439792 |
ctggctatttcaaacagccactaggtaaattagtgattatgccacttccactttctttttc |
7439852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 7439876 - 7439921
Alignment:
| Q |
185 |
catgtgtctcaaaataatagtcgtttaagatttttgcatgattttt |
230 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7439876 |
catgcgtctcaaaataatagtcgtttaaggtttttgcacgattttt |
7439921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 24499961 - 24500001
Alignment:
| Q |
190 |
gtctcaaaataatagtcgtttaagatttttgcatgattttt |
230 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
24499961 |
gtctcaaaataatagtcgtttaacatttgtgcctgattttt |
24500001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 41080758 - 41080710
Alignment:
| Q |
182 |
ctccatgtgtctcaaaataatagtcgtttaagatttttgcatgattttt |
230 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| ||| ||||||| |||| |
|
|
| T |
41080758 |
ctccatatgtctcaaaataatagtcgattaaggtttatgcatgaatttt |
41080710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 3670039 - 3669991
Alignment:
| Q |
182 |
ctccatgtgtctcaaaataatagtcgtttaagatttttgcatgattttt |
230 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3670039 |
ctccatctgtctgaaaataatagtcgtttaagatttatgcatgattttt |
3669991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 18532331 - 18532291
Alignment:
| Q |
190 |
gtctcaaaataatagtcgtttaagatttttgcatgattttt |
230 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
18532331 |
gtctcaaaataatagttgtttaaggtttgtgcatgattttt |
18532291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 49175907 - 49175943
Alignment:
| Q |
194 |
caaaataatagtcgtttaagatttttgcatgattttt |
230 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
49175907 |
caaaataatagtcgtttaaggtttgtgcatgattttt |
49175943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 32440293 - 32440253
Alignment:
| Q |
190 |
gtctcaaaataatagtcgtttaagatttttgcatgattttt |
230 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
32440293 |
gtctcaaaataatagtcgttaaaggtttgtgcatgattttt |
32440253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 38508148 - 38508188
Alignment:
| Q |
190 |
gtctcaaaataatagtcgtttaagatttttgcatgattttt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
38508148 |
gtctcaaaataatagtcgtttaagatttgtgctcgattttt |
38508188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University