View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7691_low_35 (Length: 238)

Name: NF7691_low_35
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7691_low_35
NF7691_low_35
[»] chr8 (8 HSPs)
chr8 (19-214)||(1350488-1350683)
chr8 (19-127)||(1361149-1361257)
chr8 (19-87)||(1344085-1344153)
chr8 (19-87)||(1355434-1355502)
chr8 (172-213)||(1344031-1344072)
chr8 (172-213)||(1355515-1355556)
chr8 (99-143)||(1344023-1344067)
chr8 (99-143)||(1355520-1355564)
[»] chr3 (2 HSPs)
chr3 (99-143)||(24618411-24618455)
chr3 (35-87)||(24618473-24618525)
[»] chr2 (1 HSPs)
chr2 (26-81)||(43364441-43364496)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 1350683 - 1350488
Alignment:
Q  19 aagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtcggtcatcgggtcctgatcaatctcatcatca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1350683 aagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtcggtcattgggtcctgatcaatctcatcatca 1350584  T
Q  119 aactcaaccctaggatcatcttctttctccacttgcttgtcaatttttgccgttaaggcctgatcaatcttatcatcaaactcaaccacatgatcc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350583 aactcaaccctaggatcatcttctttctccacttgcttgtcaatttttgccgttaaggcctgatcaatcttatcatcaaactcaaccacatgatcc 1350488  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 1361257 - 1361149
Alignment:
Q  19 aagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtcggtcatcgggtcctgatcaatctcatcatca 118  Q
    |||| |||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||| |||| |||||   ||| ||||||||||||||||||    
T  1361257 aagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcattaagtcatgatcaatctcatcatca 1361158  T
Q  119 aactcaacc 127  Q
    |||||||||    
T  1361157 aactcaacc 1361149  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 1344153 - 1344085
Alignment:
Q  19 aagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 87  Q
    |||| |||||||| ||||||||||| |||  |||||||||||||| ||||||||||| ||||| |||||    
T  1344153 aagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtc 1344085  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 1355434 - 1355502
Alignment:
Q  19 aagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 87  Q
    |||| |||||||| ||||||||||| |||  |||||||||||||| ||||||||||| ||||| |||||    
T  1355434 aagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtc 1355502  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 1344072 - 1344031
Alignment:
Q  172 taaggcctgatcaatcttatcatcaaactcaaccacatgatc 213  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  1344072 taaggcctgatcaatctcatcatcaaactcaaccacaagatc 1344031  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 1355515 - 1355556
Alignment:
Q  172 taaggcctgatcaatcttatcatcaaactcaaccacatgatc 213  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  1355515 taaggcctgatcaatctcatcatcaaactcaaccacaagatc 1355556  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 1344067 - 1344023
Alignment:
Q  99 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 143  Q
    |||||||||||||||||||||||||||||  | ||||||||||||    
T  1344067 cctgatcaatctcatcatcaaactcaaccacaagatcatcttctt 1344023  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 1355520 - 1355564
Alignment:
Q  99 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 143  Q
    |||||||||||||||||||||||||||||  | ||||||||||||    
T  1355520 cctgatcaatctcatcatcaaactcaaccacaagatcatcttctt 1355564  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 24618455 - 24618411
Alignment:
Q  99 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 143  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||    
T  24618455 cctgatcaatctcatcattaaactcaaccacaggatcatcttctt 24618411  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 24618525 - 24618473
Alignment:
Q  35 ctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 87  Q
    ||||||||| |||  || ||||||||||| ||||||||||||||||| |||||    
T  24618525 ctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtc 24618473  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 43364441 - 43364496
Alignment:
Q  26 tcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttc 81  Q
    |||| ||||||||||| ||| |  |||||||||||||| |||||||||||||||||    
T  43364441 tcttgtattctctcttgcaaggaacaatttaatctgcgggcaaattcttccacttc 43364496  T

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