View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7691_low_8 (Length: 479)
Name: NF7691_low_8
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 30 - 463
Target Start/End: Original strand, 34725387 - 34725820
Alignment:
| Q |
30 |
caaaaatagaaaaagtttacaaagtgtttatggcatatcgtatcctgatcaaaagagtttaaaggtgatttcatttcacatgttattttttagtaaaaac |
129 |
Q |
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| T |
34725387 |
caaaaatagaaaaagtttacagagtgtttatggcatatcgtatcctgatcaaaagagtttaaaggtgatttcatttcacatgttattttttagtaaaaac |
34725486 |
T |
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| Q |
130 |
catccagctatgcataatcacaaactgtgctgtgatgaacttggtgtttagttgaattacctctaaagaataagaaaatgttgaatagttgataacaata |
229 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34725487 |
cattcagctatgcataatcacaaactgtgttgtgatgaacttggtgtttagttgaattacctctaaagaataagaaaatgttgaatagttgataacaata |
34725586 |
T |
|
| Q |
230 |
tcagtggtctagatcctctgcgctgtgttactctgctatttttgaaataatgcttggattttgctgttgctacgtgtactatgcttattgtaaatagtgt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34725587 |
tcagtggtctagatcctctgcgctgtgttactctgctatttttgaaataatgcttggattttgctgttgctacgtgtactatgcttattgtaaatagtgt |
34725686 |
T |
|
| Q |
330 |
ctgctgtttgtggtatactgaatgttcagttgaagtaccttgtggaataagtaaatgactaatccatagttattgcatttgttggcctcctagctcctct |
429 |
Q |
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| T |
34725687 |
ctgctgtttgtggtatactgaatgttcagctgaagtaccttgtggaataagtaaatgactaatccatagttattgcatttgttggcctcctagctcctct |
34725786 |
T |
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| Q |
430 |
atgctatgctactttgcttagcttatcattgtat |
463 |
Q |
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| T |
34725787 |
atgctatgctactttgcttagcttatcattgtat |
34725820 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 15123529 - 15123616
Alignment:
| Q |
30 |
caaaaatagaaaaagtttacaaagtgtttatggcatatcgtatcctgatcaaaagagtttaaaggtgatttcatttcacatgttattt |
117 |
Q |
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|||| ||||| ||||||||||||| |||||||| ||||| |||||||| | |||||||||||||| |||||| |||| ||| ||||| |
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| T |
15123529 |
caaagatagagaaagtttacaaagagtttatggtatatcttatcctgacaataagagtttaaaggtaatttcaattcatatggtattt |
15123616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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