View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7691_low_9 (Length: 442)
Name: NF7691_low_9
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 11796105 - 11795687
Alignment:
| Q |
16 |
tatttcatcatccaatgaggtaattttcaatgtacacatagacgcatcaacatagtaacatcaatacttgtaaaatcaaacaatttgatatgctctatca |
115 |
Q |
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| T |
11796105 |
tatttcatcatgcaatgaggtaattttcgatgtccacataggcacatcaacatagtaacatcaatacttgtaaaatcaaacaatttgatacgctttatca |
11796006 |
T |
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| Q |
116 |
atatatatgaatttatatttcataacacttggtataaaaatcatatgatattcgaacattatcgaatacatagtaacacaatttcaatcaacaaaatcaa |
215 |
Q |
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| T |
11796005 |
atatat--gaatttatatttcataacacttggtataaaaagcatatgatattcgaacattatcgaatacatagtgacacaatttcaatcaacaaaatcaa |
11795908 |
T |
|
| Q |
216 |
cctgtaagttaatcaaaacaattcaatgacaaaatagccgctaattcacaacaatatcaattacgcataatctaaataagtcaataacttaatgatgttt |
315 |
Q |
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| T |
11795907 |
cctgtaagttaatcaaaacaattcaatgacaaaatagccgctaattcacaacaatatcaattacgcataatctaaataagtcaataacttaatgatgttt |
11795808 |
T |
|
| Q |
316 |
ctaattcttattttatctcacaattttacatttgcatattagttttactatcactcaaagggctacggtccttgacatcctcaaatgaacttttgaaaaa |
415 |
Q |
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| T |
11795807 |
ctaattcttattttatctcacaattttacatttgcatattagttttactatcactcaaagggctacggtccttgacatcctcaaatgaacttttgaaaaa |
11795708 |
T |
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| Q |
416 |
tatgactttttatattcttcg |
436 |
Q |
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| T |
11795707 |
tacggctttttatattgttcg |
11795687 |
T |
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Back To:
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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 340
Target Start/End: Original strand, 19956558 - 19956705
Alignment:
| Q |
192 |
cacaatttcaatcaacaaaatcaacct-gtaagttaatcaaaacaattcaatgacaaaatagccgctaattcacaacaatatcaattacgcataatctaa |
290 |
Q |
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| T |
19956558 |
cacaatttcaatcaacaaaatcaagtgagtcaagtaatcataacaatccaatagcaacatagcaactaattcacaacaacaccaattacacatgatataa |
19956657 |
T |
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| Q |
291 |
ataagtcaataacttaatgatgtttctaattcttattttatctcacaatt |
340 |
Q |
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| T |
19956658 |
atcaatcaagaacttaat-atgttt-tcaatcttattttatctcacaatt |
19956705 |
T |
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