View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7692_low_1 (Length: 785)

Name: NF7692_low_1
Description: NF7692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7692_low_1
NF7692_low_1
[»] chr7 (3 HSPs)
chr7 (14-766)||(44348402-44349154)
chr7 (441-507)||(24967136-24967202)
chr7 (521-574)||(18749834-18749887)
[»] chr1 (4 HSPs)
chr1 (282-335)||(39562320-39562373)
chr1 (600-657)||(7200939-7200996)
chr1 (519-575)||(6102153-6102209)
chr1 (79-151)||(39562158-39562230)
[»] chr8 (2 HSPs)
chr8 (551-649)||(4558722-4558821)
chr8 (442-487)||(18356414-18356458)
[»] chr3 (2 HSPs)
chr3 (447-566)||(37273142-37273269)
chr3 (441-501)||(45590732-45590792)
[»] chr4 (3 HSPs)
chr4 (519-577)||(7694025-7694083)
chr4 (477-566)||(18628518-18628605)
chr4 (519-576)||(35064853-35064910)
[»] chr6 (5 HSPs)
chr6 (600-651)||(2514624-2514675)
chr6 (447-506)||(33385605-33385664)
chr6 (522-591)||(25426152-25426222)
chr6 (447-500)||(25103233-25103286)
chr6 (614-663)||(33823391-33823440)
[»] chr2 (2 HSPs)
chr2 (447-506)||(17443543-17443602)
chr2 (520-566)||(43205317-43205363)


Alignment Details
Target: chr7 (Bit Score: 737; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 14 - 766
Target Start/End: Complemental strand, 44349154 - 44348402
Alignment:
Q  14 cagagaagatgaagccacaccaagttgtcatcaacatattgactaaagttgaagatataataccaaagtggaagatagttcccacaaaggatgtcatcaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44349154 cagagaagatgaagccacaccaagttgtcatcaacatattgactaaagttgaagatataatacctaagtggaagatagttcccacaaaggatgtcatcaa 44349055  T
Q  114 tttcgccttcaaagatccagccaaacgagaaagggtgaggttttttctcctttcttgtaaatatatctcaagttttttatttaatctataattgaggctt 213  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44349054 tttcgctttcaaagatccggccaaacgagaaagggtgaggttttttctcctttcttgtaaatatatctcaagttttttatttaatctataattgaggctt 44348955  T
Q  214 tcttaaaatgacttgaagtttagctaataatgtttcatttgatacacgacctcctttgacaatggttgcagataaggaaaaacaagttgatataccagga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348954 tcttaaaatgacttgaagtttagctaataatgtttcatttgatacacgacctcctttgacaatggttgcagataaggaaaaacaagttgatataccagga 44348855  T
Q  314 caagcccaggttaaaaacagcactagaaatgttaagaaccagcatgaatcttgaagacaccttatacaaggttaactatgcattgcatttattcaacata 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348854 caagcccaggttaaaaacagcactagaaatgttaagaaccagcatgaatcttgaagacaccttatacaaggttaactatgcattgcatttattcaacata 44348755  T
Q  414 atactcatagtttgtttgcattacaaggacttttttgaacttatctactagtataagcattgttgagactgtttggaagagtttatgaaaacaattatga 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348754 atactcatagtttgtttgcattacaaggacttttttgaacttatctactagtataagcattgttgagactgtttggaagagtttatgaaaacaattatga 44348655  T
Q  514 caagtttgttttcaacttatttctataaattctccgtgataacttatgaaaacggcttatagctacatgaaaacaattcaatctatttttatcttctatc 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348654 caagtttgttttcaacttatttctataaattctccgtgataacttatgaaaacggcttatagctacatgaaaacaattcaatctatttttatcttctatc 44348555  T
Q  614 atagaaatagcttatacttaaacacttacataataagcgattaattaagtgtatgtttgtttctattttggaggagtccaaattgtgttttcttataact 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44348554 atagaaatagcttatacttaaacacttacataataagcgattaattaagtgtatgtttgtttctattttggaggagtccaaattgtgttttcttataact 44348455  T
Q  714 ggatgccttttttgaataggaatgattttccttccaaaattgactctaacttg 766  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44348454 ggatgccttttttgaataggactgattttccttccaaaattgactctaacttg 44348402  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 441 - 507
Target Start/End: Complemental strand, 24967202 - 24967136
Alignment:
Q  441 gacttttttgaacttatctactagtataagcattgttgagactgtttggaagagtttatgaaaacaa 507  Q
    ||||||||||| ||||||||||||||||| ||||  |||||||||||||||||| ||||| ||||||    
T  24967202 gacttttttgagcttatctactagtataaacatttatgagactgtttggaagagattatggaaacaa 24967136  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 574
Target Start/End: Original strand, 18749834 - 18749887
Alignment:
Q  521 gttttcaacttatttctataaattctccgtgataacttatgaaaacggcttata 574  Q
    ||||||| |||||||| |||| || ||||||||| ||||||||||| |||||||    
T  18749834 gttttcagcttatttccataagttttccgtgatagcttatgaaaacagcttata 18749887  T

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Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 39562320 - 39562373
Alignment:
Q  282 cagataaggaaaaacaagttgatataccaggacaagcccaggttaaaaacagca 335  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  39562320 cagataaggaaaaacaagttgatatatcaggacaagccaaggttaaaaacagca 39562373  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 600 - 657
Target Start/End: Original strand, 7200939 - 7200996
Alignment:
Q  600 ttttatcttctatcatagaaatagcttatacttaaacacttacataataagcgattaa 657  Q
    ||||||||| ||| || |||||||||||||  ||||||||||||| ||||||||||||    
T  7200939 ttttatcttttattatggaaatagcttataagtaaacacttacatgataagcgattaa 7200996  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 575
Target Start/End: Complemental strand, 6102209 - 6102153
Alignment:
Q  519 ttgttttcaacttatttctataaattctccgtgataacttatgaaaacggcttatag 575  Q
    ||||||||| |||||||| |||||||||||  |||| ||||||||||| ||||||||    
T  6102209 ttgttttcagcttatttccataaattctcccagatagcttatgaaaacagcttatag 6102153  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 39562158 - 39562230
Alignment:
Q  79 aagtggaagatagttcccacaaaggatgtcatcaatttcgccttcaaagatccagccaaacgagaaagggtga 151  Q
    |||||||| |||||||| ||||||||||||||| |||  |||||||||||||   ||||||| |||| |||||    
T  39562158 aagtggaaaatagttccgacaaaggatgtcatcgattcagccttcaaagatcacaccaaacgggaaatggtga 39562230  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 551 - 649
Target Start/End: Complemental strand, 4558821 - 4558722
Alignment:
Q  551 gataacttatgaaaacggcttatagc-tacatgaaaacaattcaatctatttttatcttctatcatagaaatagcttatacttaaacacttacataataa 649  Q
    |||| |||||| |||| ||||||||| || ||||||| |||| ||  |  ||||||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  4558821 gatagcttatggaaacagcttatagcatatatgaaaataatttaactttattttatcttttattatagaaatagcttatacataaacacttacataataa 4558722  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 487
Target Start/End: Complemental strand, 18356458 - 18356414
Alignment:
Q  442 acttttttgaacttatctactagtataagcattgttgagactgttt 487  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  18356458 acttatttgaacttatctactagtataagcattg-tgagactgttt 18356414  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 447 - 566
Target Start/End: Complemental strand, 37273269 - 37273142
Alignment:
Q  447 tttgaacttatctactagtataagcattgttgagactgtttggaagagtttatgaaaacaa-ttatgacaagt-------ttgttttcaacttatttcta 538  Q
    ||||||||||| || ||| ||||||| || ||||||||||||| |||| ||||| |||||| |||||||| ||       |||||||||||||||||| |    
T  37273269 tttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttcca 37273170  T
Q  539 taaattctccgtgataacttatgaaaac 566  Q
    ||| ||||||  |||| |||||||||||    
T  37273169 taagttctccaagatagcttatgaaaac 37273142  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 501
Target Start/End: Complemental strand, 45590792 - 45590732
Alignment:
Q  441 gacttttttgaacttatctactagtataagcattgttgagactgtttggaagagtttatga 501  Q
    |||||||||||||||||||||||| ||||||| |  ||||||||||||| |||| ||||||    
T  45590792 gacttttttgaacttatctactagcataagcacttgtgagactgtttgggagagcttatga 45590732  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 577
Target Start/End: Original strand, 7694025 - 7694083
Alignment:
Q  519 ttgttttcaacttatttctataaattctccgtgataacttatgaaaacggcttatagct 577  Q
    ||||||||| |||||||| ||||| |||||  |||||||||||||||| ||||||||||    
T  7694025 ttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagct 7694083  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 566
Target Start/End: Original strand, 18628518 - 18628605
Alignment:
Q  477 tgagactgtttggaagagtttatgaaaacaa-ttatgacaagtttgttttcaacttatttctataaattctccgtgataacttatgaaaac 566  Q
    ||||||||||||| |||| |||||||||||| ||||||  |||| ||||||| |||||||| ||||  |||||  ||||||||||||||||    
T  18628518 tgagactgtttgggagagcttatgaaaacaacttatga--agtt-gttttcagcttatttccataagctctccaagataacttatgaaaac 18628605  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 576
Target Start/End: Complemental strand, 35064910 - 35064853
Alignment:
Q  519 ttgttttcaacttatttctataaattctccgtgataacttatgaaaacggcttatagc 576  Q
    ||||||||| |||||||| ||||| ||||| ||||| ||||||||||| || ||||||    
T  35064910 ttgttttcagcttatttccataaactctccatgatatcttatgaaaacagcatatagc 35064853  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 651
Target Start/End: Complemental strand, 2514675 - 2514624
Alignment:
Q  600 ttttatcttctatcatagaaatagcttatacttaaacacttacataataagc 651  Q
    ||||||||| ||| ||||||||||||||||| ||| ||||||||| ||||||    
T  2514675 ttttatcttttattatagaaatagcttatacataagcacttacatgataagc 2514624  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 33385664 - 33385605
Alignment:
Q  447 tttgaacttatctactagtataagcattgttgagactgtttggaagagtttatgaaaaca 506  Q
    ||||||||||||||||  |||||||| |  ||| |||||||||||||||||||| |||||    
T  33385664 tttgaacttatctactgatataagcacttgtgaaactgtttggaagagtttatggaaaca 33385605  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 25426222 - 25426152
Alignment:
Q  522 ttttcaacttatttctataaattctccgtgataacttatgaaaacggcttatagc-tacatgaaaacaatt 591  Q
    |||| ||||||||||||||||||||||  |||| ||||| ||||  ||||||||| ||||||||| |||||    
T  25426222 tttttaacttatttctataaattctccaggatagcttataaaaatagcttatagcttacatgaaagcaatt 25426152  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 25103233 - 25103286
Alignment:
Q  447 tttgaacttatctactagtataagcattgttgagactgtttggaagagtttatg 500  Q
    ||||| |||||||| | | ||||||| || ||||||||||||||||||||||||    
T  25103233 tttgagcttatctattggcataagcagtgctgagactgtttggaagagtttatg 25103286  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 663
Target Start/End: Original strand, 33823391 - 33823440
Alignment:
Q  614 atagaaatagcttatacttaaacacttacataataagcgattaattaagt 663  Q
    ||||||||||||||| | |||||| ||| |||||||||| ||||||||||    
T  33823391 atagaaatagcttatgcataaacatttatataataagcgtttaattaagt 33823440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 506
Target Start/End: Original strand, 17443543 - 17443602
Alignment:
Q  447 tttgaacttatctactagtataagcattgttgagactgtttggaagagtttatgaaaaca 506  Q
    ||||||||||| ||||  |||||||| |  |||||||||||||||||||||||| |||||    
T  17443543 tttgaacttatatactgatataagcacttgtgagactgtttggaagagtttatggaaaca 17443602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 520 - 566
Target Start/End: Complemental strand, 43205363 - 43205317
Alignment:
Q  520 tgttttcaacttatttctataaattctccgtgataacttatgaaaac 566  Q
    ||||||||||||||||| ||||  ||||||||||| |||||||||||    
T  43205363 tgttttcaacttatttccataagctctccgtgatagcttatgaaaac 43205317  T

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