View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7692_low_2 (Length: 491)
Name: NF7692_low_2
Description: NF7692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7692_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 34678742 - 34678268
Alignment:
| Q |
1 |
gacacgccaataaaaagacgatgttttgttataccctgcatgattggtaagattcttattcatgaagcctaaagtgatttggggtcgaacatcaatttga |
100 |
Q |
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| T |
34678742 |
gacacgccaataaaaagacgatgttttgttataccctgcatgattggtaagattcttattcatgaagcctaaagtgatttggggtcgaacatcaatttga |
34678643 |
T |
|
| Q |
101 |
tgcctttatccctagcaaagaaattggaaggggtggaaagtatttcatccacaacaactatagtcttgactaatggatacaaaaatgatctcctcaaacg |
200 |
Q |
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| T |
34678642 |
tgcctttatccctagcaaagaaattggaaggggtggaaagtatttcatccacaacaactatagtcttgactaatggatacaaaaatgatctcctcaaacg |
34678543 |
T |
|
| Q |
201 |
gctacacggtgcaacggctatgtgaacctttagaggatccaagtccaaatgaataaccacctttctttaaaatatttaacatgtttaggggtaaaattag |
300 |
Q |
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| T |
34678542 |
gctacacggtgcaacagctatgtg-acccttagaggatccaagtccaaatgaataaccacctttctttaaaatatttaacatgttta-gggtaaaattag |
34678445 |
T |
|
| Q |
301 |
gatttcatgtgctttataggggtaagagtacaatttgagggataggaagaataattttcttttagagattggattgaactttaaatagtttaggctttga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34678444 |
gatttcatgtgctttataggggtaagagtacaatttgaggggtaggaagaataattttcttttagagattggattgaactttaaatagtttaggctttga |
34678345 |
T |
|
| Q |
401 |
atttgattagcccaacccaccttcta-gttcgattaatcagttcattgaaagctgctcatgagtcaccctctaattg |
476 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34678344 |
atttgattagcccaacccaccttctacgttcgattagtcagttcattgaaagctgctcatgagtcaccctctaattg |
34678268 |
T |
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