View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7692_low_3 (Length: 291)

Name: NF7692_low_3
Description: NF7692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7692_low_3
NF7692_low_3
[»] scaffold0014 (2 HSPs)
scaffold0014 (219-264)||(71660-71705)
scaffold0014 (229-262)||(69686-69719)
[»] chr8 (9 HSPs)
chr8 (219-276)||(35019433-35019489)
chr8 (219-264)||(15825744-15825789)
chr8 (222-262)||(29725690-29725730)
chr8 (229-264)||(31642857-31642892)
chr8 (219-257)||(26951129-26951167)
chr8 (229-262)||(19143032-19143065)
chr8 (219-264)||(23625962-23626007)
chr8 (219-264)||(31640303-31640348)
chr8 (219-264)||(39069028-39069073)
[»] chr5 (10 HSPs)
chr5 (219-264)||(8520443-8520488)
chr5 (219-264)||(29390802-29390847)
chr5 (219-264)||(37250366-37250411)
chr5 (219-262)||(5100425-5100468)
chr5 (230-264)||(29640292-29640326)
chr5 (219-264)||(3033265-3033310)
chr5 (229-262)||(8525633-8525666)
chr5 (219-264)||(29639520-29639565)
chr5 (219-264)||(34858466-34858511)
chr5 (230-262)||(29389182-29389214)
[»] chr4 (17 HSPs)
chr4 (219-264)||(43590480-43590525)
chr4 (219-263)||(7113698-7113742)
chr4 (219-263)||(40846629-40846673)
chr4 (221-264)||(31623365-31623408)
chr4 (219-264)||(43594116-43594161)
chr4 (222-262)||(7111745-7111785)
chr4 (222-262)||(31624508-31624548)
chr4 (233-264)||(8081034-8081065)
chr4 (229-264)||(30112863-30112898)
chr4 (230-264)||(10658991-10659025)
chr4 (230-264)||(10873136-10873170)
chr4 (230-264)||(24577744-24577778)
chr4 (219-261)||(48952976-48953018)
chr4 (229-262)||(26918329-26918362)
chr4 (219-264)||(26923647-26923692)
chr4 (219-264)||(47650671-47650716)
chr4 (228-276)||(43940198-43940245)
[»] chr3 (14 HSPs)
chr3 (219-276)||(41889518-41889574)
chr3 (219-264)||(43862434-43862479)
chr3 (219-264)||(22978024-22978069)
chr3 (219-264)||(42167440-42167485)
chr3 (219-264)||(42877186-42877231)
chr3 (229-264)||(39129256-39129291)
chr3 (219-262)||(39131797-39131840)
chr3 (229-264)||(42164161-42164196)
chr3 (219-262)||(42879560-42879603)
chr3 (229-264)||(50938345-50938380)
chr3 (229-262)||(2229280-2229313)
chr3 (229-262)||(41888765-41888798)
chr3 (219-264)||(48071922-48071967)
chr3 (220-264)||(48073778-48073822)
[»] chr1 (7 HSPs)
chr1 (219-264)||(4640201-4640246)
chr1 (219-276)||(23259031-23259087)
chr1 (219-276)||(44110029-44110085)
chr1 (219-262)||(23260881-23260924)
chr1 (229-264)||(43847537-43847572)
chr1 (229-275)||(44300042-44300087)
chr1 (219-275)||(44299264-44299319)
[»] chr7 (15 HSPs)
chr7 (220-264)||(38224535-38224579)
chr7 (219-262)||(596216-596259)
chr7 (229-264)||(1602234-1602269)
chr7 (219-264)||(38229613-38229658)
chr7 (219-264)||(41408002-41408047)
chr7 (220-264)||(41406135-41406179)
chr7 (219-262)||(33979562-33979605)
chr7 (219-262)||(33982425-33982468)
chr7 (229-264)||(37708199-37708234)
chr7 (219-262)||(43543184-43543227)
chr7 (219-262)||(47254587-47254630)
chr7 (229-263)||(19064124-19064158)
chr7 (228-262)||(46160605-46160639)
chr7 (229-262)||(1599614-1599647)
chr7 (219-264)||(43545004-43545049)
[»] chr6 (4 HSPs)
chr6 (229-276)||(24159194-24159240)
chr6 (219-264)||(5090192-5090237)
chr6 (219-264)||(13866210-13866255)
chr6 (219-264)||(34574703-34574748)
[»] chr2 (14 HSPs)
chr2 (229-276)||(14454459-14454505)
chr2 (229-263)||(33178917-33178951)
chr2 (219-264)||(6319483-6319528)
chr2 (219-264)||(18246637-18246682)
chr2 (219-264)||(18248489-18248534)
chr2 (219-264)||(24520326-24520371)
chr2 (219-264)||(27478962-27479007)
chr2 (219-276)||(33182666-33182722)
chr2 (229-264)||(39160052-39160087)
chr2 (229-264)||(39209107-39209142)
chr2 (230-264)||(38932346-38932380)
chr2 (219-264)||(6322248-6322293)
chr2 (219-263)||(21191670-21191714)
chr2 (229-261)||(36600893-36600925)
[»] scaffold0217 (1 HSPs)
scaffold0217 (219-264)||(896-941)
[»] scaffold0009 (1 HSPs)
scaffold0009 (219-264)||(94512-94557)


Alignment Details
Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 71705 - 71660
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  71705 cactatagagcttgtaacaattaaaatttcacatcaaattcaaccc 71660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 69686 - 69719
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||||||||||||| ||||||||||||||    
T  69686 cttgtaacaattaaaatttcacatcaaattcaac 69719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 35019433 - 35019489
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgt 276  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  35019433 cactatagtgcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggatgt 35019489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 15825789 - 15825744
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||    
T  15825789 cactatatgacttgtaacaattaaaatttcacatcaaattcaaccc 15825744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 29725690 - 29725730
Alignment:
Q  222 tatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  29725690 tatagagcttgtaaaaattaaaattttacatcaaattcaac 29725730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 31642892 - 31642857
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||| ||||||||||||||||    
T  31642892 cttgtaacaattaaaatttcacatcaaattcaaccc 31642857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 26951167 - 26951129
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaat 257  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  26951167 cactataggacttgtaacaattaaaatttcacatcaaat 26951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 19143065 - 19143032
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||||||||||||| ||||||||||||||    
T  19143065 cttgtaacaattaaaatttcacatcaaattcaac 19143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 23626007 - 23625962
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||  |||||||||||||||||||| |||| |||||||||||    
T  23626007 cactatatgacttgtaacaattaaaatttcacattaaattcaaccc 23625962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 31640303 - 31640348
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  31640303 cactatagggcttgtaaaaattaaaatttcacatcaaattcaaccc 31640348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 39069028 - 39069073
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  |||| |||||||||||||| ||||||||||||||||    
T  39069028 cactataggtcttgcaacaattaaaatttcacatcaaattcaaccc 39069073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 8520443 - 8520488
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  8520443 cactatagggcttgtaacaattaaaattttacatcaaattcaaccc 8520488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 29390847 - 29390802
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  29390847 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 29390802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 37250366 - 37250411
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  37250366 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 37250411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 5100425 - 5100468
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  5100425 cactataggtcttgtaacaattaaaatttcacatcaaattcaac 5100468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 29640326 - 29640292
Alignment:
Q  230 ttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||||||||||||| ||||||||||||||||    
T  29640326 ttgtaacaattaaaatttcacatcaaattcaaccc 29640292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 3033265 - 3033310
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||||  ||||||||| ||||||||||||||||||| |||||    
T  3033265 cactatagagtttgtaacaactaaaattttacatcaaatttaaccc 3033310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 8525666 - 8525633
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||||||||||||| ||||||||||||||    
T  8525666 cttgtaacaattaaaatttcacatcaaattcaac 8525633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 29639520 - 29639565
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||| ||| ||||||||||||||||    
T  29639520 cactatagggcttgtaacaattaaagtttcacatcaaattcaaccc 29639565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 34858466 - 34858511
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||| ||||    
T  34858466 cactatagggcttgtaacaattaaaatttcacatcaaattccaccc 34858511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 29389182 - 29389214
Alignment:
Q  230 ttgtaacaattaaaattttacatcaaattcaac 262  Q
    |||||||||||||||||| ||||||||||||||    
T  29389182 ttgtaacaattaaaatttcacatcaaattcaac 29389214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 43590480 - 43590525
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||    
T  43590480 cactataggacttgtaacaattaaaatttaacatcaaattcaaccc 43590525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 7113742 - 7113698
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaacc 263  Q
    |||||||| || |||||||||||||||||||||||||||||||||    
T  7113742 cactataggacatgtaacaattaaaattttacatcaaattcaacc 7113698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 40846673 - 40846629
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaacc 263  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||    
T  40846673 cactatagagcttgtaacaattaaaatttcacatcaaattcaacc 40846629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 31623365 - 31623408
Alignment:
Q  221 ctatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  31623365 ctataggacttgtaacaattaaaatttcacatcaaattcaaccc 31623408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 43594161 - 43594116
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  43594161 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 43594116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 7111745 - 7111785
Alignment:
Q  222 tatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  7111745 tatagagcttgtaacaattaaaatttcacatcaaattcaac 7111785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 31624548 - 31624508
Alignment:
Q  222 tatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  31624548 tataggacttgtaacaattaaaatttcacatcaaattcaac 31624508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 264
Target Start/End: Complemental strand, 8081065 - 8081034
Alignment:
Q  233 taacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||||||||||||||||    
T  8081065 taacaattaaaattttacatcaaattcaaccc 8081034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Original strand, 30112863 - 30112898
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30112863 cttgtaacaattaaaatttcacatcaaattcaaccc 30112898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 10659025 - 10658991
Alignment:
Q  230 ttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||||||||||||| ||||||||||||||||    
T  10659025 ttgtaacaattaaaatttcacatcaaattcaaccc 10658991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 10873170 - 10873136
Alignment:
Q  230 ttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||||||||||||| ||||||||||||||||    
T  10873170 ttgtaacaattaaaatttcacatcaaattcaaccc 10873136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 24577778 - 24577744
Alignment:
Q  230 ttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||||||||||||| ||||||||||||||||    
T  24577778 ttgtaacaattaaaatttcacatcaaattcaaccc 24577744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 261
Target Start/End: Original strand, 48952976 - 48953018
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaa 261  Q
    ||||||||  ||||||||||||||||||| |||||||||||||    
T  48952976 cactatagggcttgtaacaattaaaatttcacatcaaattcaa 48953018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 26918329 - 26918362
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||||||||||||| ||||||||||||||    
T  26918329 cttgtaacaattaaaatttcacatcaaattcaac 26918362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 26923692 - 26923647
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||| ||||||||||||| ||||||||||||||    
T  26923692 cactatagggcttgtaagaattaaaattttatatcaaattcaaccc 26923647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 47650716 - 47650671
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| |||||||||| |||||    
T  47650716 cactataggtcttgtaacaattaaaatttcacatcaaatttaaccc 47650671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 43940245 - 43940198
Alignment:
Q  228 acttgtaacaattaaaattttacatcaaattcaaccccatcatggatgt 276  Q
    |||| ||||||||||||||| |||||| |||||| ||||||||||||||    
T  43940245 acttctaacaattaaaatttcacatcatattcaa-cccatcatggatgt 43940198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 41889574 - 41889518
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgt 276  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  41889574 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggatgt 41889518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 43862479 - 43862434
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  43862479 cactatagagcttgtaacaattaaaatttcacatcaaattcaaccc 43862434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 22978024 - 22978069
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||    
T  22978024 cactatatgacttgtaacaattaaaatttcacatcaaattcaaccc 22978069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 42167485 - 42167440
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  42167485 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 42167440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 42877186 - 42877231
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  42877186 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 42877231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Original strand, 39129256 - 39129291
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||||||||||||||| |||||||||||||||    
T  39129256 cttgtaacaattaaaattttgcatcaaattcaaccc 39129291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 39131840 - 39131797
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  39131840 cactatagggcttgtaacaattaaaatttcacatcaaattcaac 39131797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Original strand, 42164161 - 42164196
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42164161 cttgtaacaattaaaatttcacatcaaattcaaccc 42164196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 42879603 - 42879560
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  42879603 cactatagggcttgtaacaattaaaatttcacatcaaattcaac 42879560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 50938380 - 50938345
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||| ||||||||||||||||    
T  50938380 cttgtaacaattaaaatttcacatcaaattcaaccc 50938345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 2229313 - 2229280
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||||||||||||| ||||||||||||||    
T  2229313 cttgtaacaattaaaatttcacatcaaattcaac 2229280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 41888765 - 41888798
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||||||||||||| ||||||||||||||    
T  41888765 cttgtaacaattaaaatttcacatcaaattcaac 41888798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 48071922 - 48071967
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||| ||||||||| ||||||||||||||||    
T  48071922 cactatagggcttgtaacagttaaaatttcacatcaaattcaaccc 48071967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 48073822 - 48073778
Alignment:
Q  220 actatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||  ||||||| ||||||||||| ||||||||||||||||    
T  48073822 actatagggcttgtaaaaattaaaatttcacatcaaattcaaccc 48073778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 4640246 - 4640201
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  4640246 cactatagagcttgtaacaattaaaatttcacatcaaattcaaccc 4640201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 23259031 - 23259087
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgt 276  Q
    |||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  23259031 cactatatgacttgtaacaattaaaattttacatcgaattcaa-cccatcatggatgt 23259087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 44110085 - 44110029
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgt 276  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  44110085 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggatgt 44110029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 23260924 - 23260881
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  23260924 cactatagggcttgtaacaattaaaatttcacatcaaattcaac 23260881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 43847572 - 43847537
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||| ||||||||||||||||    
T  43847572 cttgtaacaattaaaatttcacatcaaattcaaccc 43847537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 44300087 - 44300042
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatg 275  Q
    ||||||||||||||||||| ||||||||||||| | |||||||||||    
T  44300087 cttgtaacaattaaaatttcacatcaaattcaa-ctcatcatggatg 44300042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 44299264 - 44299319
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatg 275  Q
    |||| ||| |||||||||||||||||||| |||||||||| ||  ||||||||||||    
T  44299264 cactgtaggacttgtaacaattaaaatttcacatcaaatttaa-tccatcatggatg 44299319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 38224535 - 38224579
Alignment:
Q  220 actatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||    
T  38224535 actataggacttgtaacaattaaaatttcacatcaaattcaaccc 38224579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 596259 - 596216
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  596259 cactataggacttgtaacaattaaaatttcacatcaaattcaac 596216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 1602269 - 1602234
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||||||||||||||||||||    
T  1602269 cttgtaacaattaaaattttacatcaaattcaaccc 1602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 38229658 - 38229613
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  38229658 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 38229613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 41408047 - 41408002
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  41408047 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 41408002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 41406135 - 41406179
Alignment:
Q  220 actatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||    
T  41406135 actatagggcttgtaacaattaaaatttcacatcaaattcaaccc 41406179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 33979562 - 33979605
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||    
T  33979562 cactatataacttgcaacaattaaaatttcacatcaaattcaac 33979605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 33982468 - 33982425
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    |||||||| ||||||||||||||| |||| ||||||||||||||    
T  33982468 cactataggacttgtaacaattaacatttcacatcaaattcaac 33982425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 37708234 - 37708199
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||| ||||||||||||||||    
T  37708234 cttgtaacaattaaaatttcacatcaaattcaaccc 37708199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 43543184 - 43543227
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  43543184 cactatagggcttgtaacaattaaaatttcacatcaaattcaac 43543227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 47254630 - 47254587
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  47254630 cactataggtcttgtaacaattaaaatttcacatcaaattcaac 47254587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 19064124 - 19064158
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaacc 263  Q
    ||||||||||||||||||| |||||||||||||||    
T  19064124 cttgtaacaattaaaatttcacatcaaattcaacc 19064158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 46160639 - 46160605
Alignment:
Q  228 acttgtaacaattaaaattttacatcaaattcaac 262  Q
    |||||||||||||||||||| ||||||||||||||    
T  46160639 acttgtaacaattaaaatttcacatcaaattcaac 46160605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 1599614 - 1599647
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaac 262  Q
    ||||||||||||||||||| ||||||||||||||    
T  1599614 cttgtaacaattaaaatttcacatcaaattcaac 1599647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 43545049 - 43545004
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||| ||||||||||||||| ||||||||||||||||    
T  43545049 cactatagggcttttaacaattaaaatttcacatcaaattcaaccc 43545004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 24159194 - 24159240
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgt 276  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  24159194 cttgtaacaattaaaattttacatcaaattcaa-ctcatcatggatgt 24159240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 5090237 - 5090192
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  5090237 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 5090192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 13866210 - 13866255
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||    
T  13866210 cactatagcgcttgtaacaattaaaattttacatcaaactcaaccc 13866255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 34574748 - 34574703
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  34574748 cactatagggcttgtaaaaattaaaatttcacatcaaattcaaccc 34574703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 14454505 - 14454459
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgt 276  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  14454505 cttgtaacaattaaaatttcacatcaaattcaa-cccatcatggatgt 14454459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 33178917 - 33178951
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaacc 263  Q
    |||||||||||||||||||||||||||||||||||    
T  33178917 cttgtaacaattaaaattttacatcaaattcaacc 33178951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 6319483 - 6319528
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  6319483 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 6319528  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 18246637 - 18246682
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  18246637 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 18246682  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 18248534 - 18248489
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  18248534 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 18248489  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 24520371 - 24520326
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  24520371 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 24520326  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 27479007 - 27478962
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||| |||| |||||||||||||| ||||||||||||||||    
T  27479007 cactatagatcttgcaacaattaaaatttcacatcaaattcaaccc 27478962  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 33182722 - 33182666
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgt 276  Q
    ||||||||  ||||||||||||||||||| |||||||||||||  |||||||||||||    
T  33182722 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-tccatcatggatgt 33182666  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Original strand, 39160052 - 39160087
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39160052 cttgtaacaattaaaatttcacatcaaattcaaccc 39160087  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 39209142 - 39209107
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39209142 cttgtaacaattaaaatttcacatcaaattcaaccc 39209107  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 38932380 - 38932346
Alignment:
Q  230 ttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||||||||||||||||||||||| |||||    
T  38932380 ttgtaacaattaaaattttacatcaaattgaaccc 38932346  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 6322293 - 6322248
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| | ||||||||||||||    
T  6322293 cactatagggcttgtaacaattaaaatttcatatcaaattcaaccc 6322248  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 21191714 - 21191670
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaacc 263  Q
    ||||||||  ||||||||||||||||||| |||||||||| ||||    
T  21191714 cactatagggcttgtaacaattaaaatttcacatcaaatttaacc 21191670  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 36600893 - 36600925
Alignment:
Q  229 cttgtaacaattaaaattttacatcaaattcaa 261  Q
    ||||||||||||||||||| |||||||||||||    
T  36600893 cttgtaacaattaaaatttcacatcaaattcaa 36600925  T

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Target: scaffold0217 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 941 - 896
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  941 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 896  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 94557 - 94512
Alignment:
Q  219 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 264  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  94557 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 94512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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