View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7692_low_4 (Length: 250)
Name: NF7692_low_4
Description: NF7692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7692_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43341494 - 43341730
Alignment:
| Q |
1 |
tttaaggcgaagtggttctttctttgtgacaacaagtccaaatacctcactcatatctatatcttgttcattagaatttgtttcaaatggtagcttccaa |
100 |
Q |
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| T |
43341494 |
tttaaggcgaagtggttctttttttgtgacaacaagtccaaatacctcactcatatcaatatcttgttcattagaatttgtttcaaatggtagcttccaa |
43341593 |
T |
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| Q |
101 |
ttgaaccaataaagaaggctagcaagcacatattcaacagtagttactccaaaattcattccagggcatcctcttctcccaaaaccaaatgggataaact |
200 |
Q |
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| T |
43341594 |
ttgaaccaataaagaaggctagcaagcacatattcaacagtagttactccaaaattcattccagggcatcctcttctcccaaaaccaaatgggataaact |
43341693 |
T |
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| Q |
201 |
gaaaatcttgaccttgaaaatcaacttggctatgttc |
237 |
Q |
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| T |
43341694 |
gaaaatcttgaccttgaaaatcaacttggctatgttc |
43341730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 43359215 - 43359440
Alignment:
| Q |
9 |
gaagtggttctttctttgtgacaacaagtccaaatacctcactcatatctatatcttgttcattagaatttgtttcaaatggtagcttccaattgaacca |
108 |
Q |
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||||||||||||||||||| | | | | |||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||| |||||| |
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| T |
43359215 |
gaagtggttctttctttgtaagagccattccaaatatctcactcatatctatatcttgttcaccttcatttgtttca---ggtagtttccaatcgaacca |
43359311 |
T |
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| Q |
109 |
ataaagaaggctagcaagcacatattcaacagtagttactccaaaattcattccagggcatcctcttctcccaaaaccaaatgggataaactgaaaatct |
208 |
Q |
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| T |
43359312 |
ataaagaaggttagcaatcacatattcaacaacagctgttgcaaaattatatccaggacacccccttctcccaaaaccaaatgggataaactgaaaatgt |
43359411 |
T |
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| Q |
209 |
tgaccttgaaaatcaacttggctatgttc |
237 |
Q |
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| T |
43359412 |
tgacctttaaaatcaacttggttatgttc |
43359440 |
T |
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