View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7692_low_5 (Length: 228)

Name: NF7692_low_5
Description: NF7692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7692_low_5
NF7692_low_5
[»] chr5 (1 HSPs)
chr5 (26-222)||(14233187-14233383)
[»] chr4 (2 HSPs)
chr4 (40-175)||(26904441-26904576)
chr4 (39-175)||(5722281-5722417)
[»] chr7 (2 HSPs)
chr7 (37-165)||(35897767-35897895)
chr7 (39-175)||(30379753-30379891)
[»] chr2 (3 HSPs)
chr2 (26-147)||(38100042-38100161)
chr2 (39-151)||(301464-301576)
chr2 (37-165)||(3460919-3461047)
[»] chr1 (2 HSPs)
chr1 (42-165)||(50778933-50779056)
chr1 (39-160)||(44536827-44536948)
[»] chr3 (2 HSPs)
chr3 (38-160)||(1662906-1663028)
chr3 (39-175)||(18646051-18646187)
[»] chr6 (1 HSPs)
chr6 (44-165)||(28248272-28248393)
[»] scaffold0038 (1 HSPs)
scaffold0038 (44-151)||(48448-48555)
[»] chr8 (1 HSPs)
chr8 (67-175)||(37787536-37787644)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 14233383 - 14233187
Alignment:
Q  26 ttgtttaaagtttgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatc 125  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14233383 ttgtctaaagtttgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagctttttatc 14233284  T
Q  126 tcaaatttatctagcaattcaccaatatacttttgttgatgcattaccattcgaatgtacaaaatggtaatataaaattttgacactaaacacgaaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14233283 tcaaatttatctagcaattcaccaatatacttttgttgatgcattaccattcgaatgtacaaaatggtaatataaaattttgacactaaacatgaaa 14233187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 26904576 - 26904441
Alignment:
Q  40 ttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatctag 139  Q
    ||||||| |||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| |     
T  26904576 ttgaatcaactttctcttcttcactgcactcatctagctttgggtatgtttctgatggatttgagactgaattgcagcttttcatctcaaatttatccaa 26904477  T
Q  140 caattcaccaatatacttttgttgatgcattaccat 175  Q
       ||||||||| ||| |||||||||||||||||||    
T  26904476 tggttcaccaatgtacatttgttgatgcattaccat 26904441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 5722281 - 5722417
Alignment:
Q  39 gttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatcta 138  Q
    |||||||| ||||| |||||||   || ||||||||||||||||||| |||| |||||||||| | |||||||||||  | ||||| ||||||||||| |    
T  5722281 gttgaatctactttttcttctttgttgcactcatctagctttgagttagtttctgatggatttaaaactgaattgcaattcttcatttcaaatttatcca 5722380  T
Q  139 gcaattcaccaatatacttttgttgatgcattaccat 175  Q
     ||| | |||||| || ||||| |||| ||| |||||    
T  5722381 acaacttaccaatgtatttttgctgatacatcaccat 5722417  T

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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 35897895 - 35897767
Alignment:
Q  37 ttgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatc 136  Q
    |||| ||||||||||| ||||||||| |  ||||||| |||||||||||||| | |||||||||||| |||| ||||||||| ||||| |||||||||||    
T  35897895 ttgtggaatccactttttcttcttcaatacactcatccagctttgagtttgtctctgatggatttgaaactgtattgcagctcttcatttcaaatttatc 35897796  T
Q  137 tagcaattcaccaatatacttttgttgat 165  Q
     |||||||||||||| || ||||||||||    
T  35897795 aagcaattcaccaatgtatttttgttgat 35897767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 30379891 - 30379753
Alignment:
Q  39 gttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatcta 138  Q
    ||||| |||||||| |||||||||||| | ||| | ||||| |||||||||| ||||||||| |||| |||||||||   |||||| |||||||| || |    
T  30379891 gttgattccacttt-tcttcttcactgcattcaacaagcttcgagtttgtttctgatggattagagattgaattgcaatctttcatttcaaatttctcca 30379793  T
Q  139 gc---aattcaccaatatacttttgttgatgcattaccat 175  Q
    ||   ||||||||||| |||||||| ||||||||||||||    
T  30379792 gcattaattcaccaatgtacttttgctgatgcattaccat 30379753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 38100042 - 38100161
Alignment:
Q  26 ttgtttaaagtttgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatc 125  Q
    |||||| ||| | |||||||||| |||||||||||||||| ||||||||| |||  ||||||||| |||||||||||||||||||||||| |||||||||    
T  38100042 ttgtttgaagctagttgaatccaatttctcttcttcactgcactcatctaactt--agtttgtttctgatggatttgagactgaattgcaacttttcatc 38100139  T
Q  126 tcaaatttatctagcaattcac 147  Q
    |||| |||||| || |||||||    
T  38100140 tcaattttatccagtaattcac 38100161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 301576 - 301464
Alignment:
Q  39 gttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatcta 138  Q
    |||||| | ||||| |||||||  ||| ||||||||||||||||||| |||| |||||||||||| |||||||||||  | ||||| ||||||||||| |    
T  301576 gttgaagctactttttcttctttgctgcactcatctagctttgagttagtttctgatggatttgaaactgaattgcaattcttcatttcaaatttatcca 301477  T
Q  139 gcaattcaccaat 151  Q
     ||||||||||||    
T  301476 acaattcaccaat 301464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 3461047 - 3460919
Alignment:
Q  37 ttgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatc 136  Q
    |||| ||||||||||| ||||||||| |  ||||||| | |||||||||||| | |||  ||||||| |||| |||||| || ||||| |||||||||||    
T  3461047 ttgtggaatccactttttcttcttcaatacactcatccaactttgagtttgtctctgaaagatttgaaactgtattgcaactcttcatttcaaatttatc 3460948  T
Q  137 tagcaattcaccaatatacttttgttgat 165  Q
     |||||||||||||| || ||||||||||    
T  3460947 aagcaattcaccaatgtatttttgttgat 3460919  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 50778933 - 50779056
Alignment:
Q  42 gaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatctagca 141  Q
    ||||||||||| ||||| ||| || ||||||| | |||||||||||| | |||||||||||| |||| ||||||||| ||||| |||||||| || ||||    
T  50778933 gaatccactttttcttcatcagtgcactcatccaactttgagtttgtctctgatggatttgaaactgtattgcagctcttcatttcaaatttttcaagca 50779032  T
Q  142 attcaccaatatacttttgttgat 165  Q
    |||||||||| || ||||||||||    
T  50779033 attcaccaatgtatttttgttgat 50779056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 44536827 - 44536948
Alignment:
Q  39 gttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatcta 138  Q
    |||||||| ||||| |||| ||  ||| |||||||||| |||||||| |||| |||||||||||| ||| |||||||  | ||||| |||||||| || |    
T  44536827 gttgaatctactttttcttgtttgctgcactcatctagatttgagttagtttctgatggatttgaaacttaattgcaattcttcatttcaaatttctcca 44536926  T
Q  139 gcaattcaccaatatacttttg 160  Q
     ||| |||||||| || |||||    
T  44536927 acaactcaccaatgtatttttg 44536948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 1663028 - 1662906
Alignment:
Q  38 tgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatct 137  Q
    |||||||||||||||||||| |||| || | ||||||| |||| |||| || | |||||||||||||| |||||| || |||| ||| | |||||| |||    
T  1663028 tgttgaatccactttctcttattcattgcattcatctaacttttagttagtctctgatggatttgagattgaattacaactttccatattaaatttctct 1662929  T
Q  138 agcaattcaccaatatacttttg 160  Q
    |||||||||||||||||||||||    
T  1662928 agcaattcaccaatatacttttg 1662906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 18646051 - 18646187
Alignment:
Q  39 gttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatcta 138  Q
    |||||||| ||||| |||||||   || ||||||||||||||||||| |||| |||||||||| | |||||||||||  | ||||| ||||||||||| |    
T  18646051 gttgaatctactttttcttctttgttgcactcatctagctttgagttagtttctgatggatttaaaactgaattgcaattcttcatttcaaatttatcca 18646150  T
Q  139 gcaattcaccaatatacttttgttgatgcattaccat 175  Q
     ||| | |||||| || ||||| |||| ||| |||||    
T  18646151 acaacttaccaatgtatttttgctgatacatcaccat 18646187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 28248393 - 28248272
Alignment:
Q  44 atccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatctagcaat 143  Q
    ||||||||| ||||||||| || ||||||| || ||||||||||| | ||| |||||||| |||| ||||||||| ||||| ||||||||||| ||||||    
T  28248393 atccactttttcttcttcaatgcactcatccagatttgagtttgtctctgaaggatttgaaactgtattgcagctcttcatttcaaatttatcaagcaat 28248294  T
Q  144 tcaccaatatacttttgttgat 165  Q
    |||||||| || |||| |||||    
T  28248293 tcaccaatgtattttttttgat 28248272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 48555 - 48448
Alignment:
Q  44 atccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatctagcaat 143  Q
    ||||||||| ||||||||| || ||||||| || ||||||||||| | ||| |||||||| |||| ||||||||| ||||| ||||||||||| ||||||    
T  48555 atccactttttcttcttcaatgcactcatccagatttgagtttgtctctgaaggatttgaaactgtattgcagctcttcatttcaaatttatcaagcaat 48456  T
Q  144 tcaccaat 151  Q
    ||||||||    
T  48455 tcaccaat 48448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 37787536 - 37787644
Alignment:
Q  67 actcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttcatctcaaatttatctagcaattcaccaatatacttttgttgatg 166  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||||||||  | ||||| ||||||||||  | ||| |||||||| || ||||| ||||     
T  37787536 actcagctagctttgagttagtttatgatggatttgaaactgaattgcaattcttcatttcaaatttattcaacaactcaccaatgtatttttgctgata 37787635  T
Q  167 cattaccat 175  Q
    ||| |||||    
T  37787636 catcaccat 37787644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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