View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7693_high_10 (Length: 286)
Name: NF7693_high_10
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7693_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 24 - 266
Target Start/End: Complemental strand, 32364971 - 32364725
Alignment:
| Q |
24 |
aattgatactcgcgatcaatcttcggtttcatctttggttggacaagacgtagtatcaagcaaatccgacacaagttcttctcttgaaagaggtaaagat |
123 |
Q |
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| T |
32364971 |
aattgatactcgcgatcaatcttcggtttcatgtttggctggacaagacgtagtatcaagcaaatccgacacaagttcttctcttgaacgacgtaaagat |
32364872 |
T |
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| Q |
124 |
ggaacaatgaatccaccaataggattagtaatacaaagagaagct-cta---tagtctctgaaagcaaaagagggaaatgattcttcttgattgttatgt |
219 |
Q |
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| T |
32364871 |
gaaacgatgaatccaccaatagcattattaatacaaagagaagctcctaccttattctctgaaagcaaaagagggaaatgattcttcttgattgttatgt |
32364772 |
T |
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| Q |
220 |
ataactacattgtttgagatgatcccttaaatttctatgtaaaccat |
266 |
Q |
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| T |
32364771 |
atcactacattgtttgagatgatccctcaaatttctatgtaaaccat |
32364725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 68 - 266
Target Start/End: Complemental strand, 32376624 - 32376426
Alignment:
| Q |
68 |
aagacgtagtatcaagcaaatccgacacaagttcttctcttgaaagaggtaaagatggaacaatgaatccaccaataggattagtaatacaaagagaagc |
167 |
Q |
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|||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |
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| T |
32376624 |
aagacgtagtatcagccaaatctggctcaagttcttctcttgaaagaggtaaagatggaacaatgaatcccccaatagcattagtagtacaaagagaagc |
32376525 |
T |
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| Q |
168 |
tctatagtctctgaaagcaaaagagggaaatgattcttcttgattgttatgtataactacattgtttgagatgatcccttaaatttctatgtaaaccat |
266 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376524 |
tctttagtctctgaaagtaaaagagggaaatgattcttcttgattgttatgtataactacattgtttgagatgatcccttaaatttctatgtaaaccat |
32376426 |
T |
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