View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7693_high_12 (Length: 257)
Name: NF7693_high_12
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7693_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 21468801 - 21468576
Alignment:
| Q |
17 |
aaaatggccgcaattgcagttgcatcggccacatttggata-tataaataaaagtgaatagtagaatatgatgtttttggaagagtagtactaaccagga |
115 |
Q |
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| T |
21468801 |
aaaatggccgttattgcagttacatcggccacgttacgataatattaataaaagtgaatagcagaatttgatgtttttggaagagtagtactaaccagga |
21468702 |
T |
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| Q |
116 |
gcgatgtaaccataagaaccagctagtgtacttgaagatcgtgcaaaatctccatcatcaacaagttttgcaagtccaaaatcagctatgtatggttcaa |
215 |
Q |
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| T |
21468701 |
gctatgtaaccataagaaccagctagtgtacttgaagatcgtgcaaaatctccatcatcaacaagtttcgcaagtccaaaatcagctatgtatggttcaa |
21468602 |
T |
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| Q |
216 |
attcaagacctatgaggatgttgttg |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
21468601 |
attcaagacctatgaggatgttgttg |
21468576 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 20132695 - 20132578
Alignment:
| Q |
105 |
actaaccaggagcgatgtaaccataagaaccagctagtgtacttgaagatcgtgcaaaatctccatcatcaacaagttttgcaagtccaaaatcagctat |
204 |
Q |
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| T |
20132695 |
actaacctggagcgatataaccataggaaccggcaactgtattggaagaacgaccgacatcaccatcatcaacaagcttagccaagccaaaatcagcaat |
20132596 |
T |
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| Q |
205 |
gtatggttcaaattcaag |
222 |
Q |
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| T |
20132595 |
ataaggttcaaattcaag |
20132578 |
T |
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