View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7693_high_18 (Length: 231)
Name: NF7693_high_18
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7693_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 15395827 - 15396044
Alignment:
| Q |
1 |
tgtacaaattgcatttactctcgtggtgtttccttgccttcttttagcatattctggacaggctgcatatctggtgaataacttgcatcattcacaagat |
100 |
Q |
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| T |
15395827 |
tgtacaaattgcatttactctcgtggtgtttccttgccttcttttagcatattctggacaggctgcatatctggtgaataacttgcatcattcacaagat |
15395926 |
T |
|
| Q |
101 |
gtgttttaccgttgtattccaggtttgttatatctgtcacactctacatcgaaatttctgtttgagcatagttatcaaatcgtgattcaaatcaagaatt |
200 |
Q |
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| T |
15395927 |
gtgttttaccgttgtattccaggtttgttatatc--tcacactctacatcgaaatttctgtttgagcatagttatcaaatcgtgattcaaatcaagaatt |
15396024 |
T |
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| Q |
201 |
gggagacctatattcttcga |
220 |
Q |
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||||||||||| || ||||| |
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| T |
15396025 |
gggagacctatttttttcga |
15396044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 15387453 - 15387593
Alignment:
| Q |
1 |
tgtacaaattgcatttactctcgtggtgtttccttgccttcttttagcatattctggacaggctgcatatctggtgaataacttgcatcattcacaagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15387453 |
tgtacaaattgcatttactctcgtggtgtttccttgccttcttttagcatattctggacaggctgcatatctggtgaataacttgcatcattcacaagat |
15387552 |
T |
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| Q |
101 |
gtgttttaccgttgtattccaggtttgttatatctgtcaca |
141 |
Q |
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| T |
15387553 |
gtgttttaccgttctattccaggtttgttatatctgtcaca |
15387593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 38667265 - 38667149
Alignment:
| Q |
9 |
ttgcatttactctcgtggtgtttccttgccttcttttagcatattctggacaggctgcatatctggtgaataacttgcatcattcacaagatgtgtttta |
108 |
Q |
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||||||||||||| || |||||||| |||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||||| |||||| ||||| |
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| T |
38667265 |
ttgcatttactctggttgtgtttccctgccttcttttagcctattctggacaagctgcataccttatgaataacttgactcattcaaaagatgcttttta |
38667166 |
T |
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| Q |
109 |
ccgttgtattccaggtt |
125 |
Q |
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|||| ||||||||||| |
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| T |
38667165 |
tcgttctattccaggtt |
38667149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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