View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7693_high_2 (Length: 490)
Name: NF7693_high_2
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7693_high_2 |
 | |
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| [»] scaffold0036 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 415
Target Start/End: Original strand, 44300527 - 44300928
Alignment:
| Q |
23 |
aattgattattgttcgaatggatcagggattccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggaga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44300527 |
aattgattattgttcgaatggatcagggattccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggaga |
44300626 |
T |
|
| Q |
123 |
ggaatctcaaggaactatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtctcc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
44300627 |
ggaatctcaaggaactatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtcgcc |
44300726 |
T |
|
| Q |
223 |
gtagatccagtctctttgatatcaccaccgacacagtaa--ttttcctgcaatctc--tatagaaactgtaaaacactttttgcctaaatttgtattcaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
44300727 |
gtagatccagtctctttgatatcaccaccgacacggtaaacttttccggcaatctctttatagaaacagtaaaaaactttttgcctaaatttgtattcaa |
44300826 |
T |
|
| Q |
319 |
ttagttacttatcgatagagtagta-----ttatggtattgcagaaatgagatttaattttctgttatttattggttttctaattttgattcaagcaagt |
413 |
Q |
| |
|
||| ||||| ||| ||| ||||||| |||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
44300827 |
ttacttactaatcaataaagtagtactgtcttatagtattgcaaaatagagatttaattttctgtcatttattggttttctaattttgattcaatcaagt |
44300926 |
T |
|
| Q |
414 |
tc |
415 |
Q |
| |
|
|| |
|
|
| T |
44300927 |
tc |
44300928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 38 - 414
Target Start/End: Original strand, 99812 - 100193
Alignment:
| Q |
38 |
gaatggatcagggattccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaac |
137 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
99812 |
gaatggatcaaggattccgtggacggatgaagagcacaagttgttttcggttggattgcagaaagttgataaaggtgattggagaggaatctcaaggaac |
99911 |
T |
|
| Q |
138 |
tatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctct |
237 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||| | |
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|
| T |
99912 |
tatgtgaaaacaagaacgcctatgcaggttgcaagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgtcgccgtagatccagtctat |
100011 |
T |
|
| Q |
238 |
ttgatatcaccaccgacacagtaattt-tcctgcaatctc--tatagaaactgtaaaacactttttgcctaaatttgtattcaattagttacttatcgat |
334 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||| ||||||||| |||||| ||||||||| |||| |||||||||||||||||| ||| || |
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|
| T |
100012 |
ttgatatcaccaccgacagggtaatttctccggcaatctctttatagaaacagtaaaaaactttttgctcaaatgtgtattcaattagttactaatcaat |
100111 |
T |
|
| Q |
335 |
agagtagtattatggtattgcagaaatgagatttaattt--tctgttatttattggttttctaattttgattcaagcaagtt |
414 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
100112 |
agagtagtattatgatattgcaaaactgagatttaattttctctgttatttattggttttctaattttgattgaatcaagtt |
100193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 38 - 414
Target Start/End: Original strand, 38404222 - 38404603
Alignment:
| Q |
38 |
gaatggatcagggattccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaac |
137 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
38404222 |
gaatggatcaaggattccgtggacggaggaagagcacaagttgttttcggttggattgcagaaagttgacaaaggtgattggagaggaatctcaaggaac |
38404321 |
T |
|
| Q |
138 |
tatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctct |
237 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||| |||| || ||| || |||||||||||||| |
|
|
| T |
38404322 |
tatgtgaaaacaagaacgccttcgcaggttgcaagtcatgctcagaagtactttctctgccgaagtaatcgcaattgctgtcgccatagatccagtctct |
38404421 |
T |
|
| Q |
238 |
ttgatatcaccaccgacacagtaattt-tcctgcaatctc--tatagaaactgtaaaacactttttgcctaaatttgtattcaattagttacttatcgat |
334 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||| ||||||||| |||||| |||||||||| |||| |||||||||||||||||| ||| || |
|
|
| T |
38404422 |
ttgatatcaccaccgacagggtaatttctccggcaatctctttatagaaacagtaaaaaactttttgcccaaatgtgtattcaattagttactaatcaat |
38404521 |
T |
|
| Q |
335 |
agagtagtattatggtattgcagaaatgagatttaattt--tctgttatttattggttttctaattttgattcaagcaagtt |
414 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
38404522 |
agagtagtattatgatattgcaaaactgagatttaattttctctgttatttattggttttctaattttgattgaatcaagtt |
38404603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 170 - 414
Target Start/End: Original strand, 31232234 - 31232483
Alignment:
| Q |
170 |
aagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctctttgatatcaccaccgacacagtaattt-tcct |
268 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||| ||| |
|
|
| T |
31232234 |
aagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgtcgccgtagatccagtctttttgatatcaccaccgacagggtaatttctccg |
31232333 |
T |
|
| Q |
269 |
gcaatctc--tatagaaactgtaaaacactttttgcctaaatttgtattcaattagttacttatcgatagagtagtattatggtattgcagaaatgagat |
366 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||| |||| |||||||||||||||||| ||| |||||||||||||||| ||||||| || |||||| |
|
|
| T |
31232334 |
gcaatctctttatagaaacagtaaaaaactttttgcccaaatgtgtattcaattagttactaatcaatagagtagtattatgatattgcaaaactgagat |
31232433 |
T |
|
| Q |
367 |
ttaattt--tctgttatttattggttttctaattttgattcaagcaagtt |
414 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
31232434 |
ttaattttctctgttatttattggttttctaattttgattgaatcaagtt |
31232483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 170 - 414
Target Start/End: Complemental strand, 36236242 - 36235992
Alignment:
| Q |
170 |
aagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctctttgatatcaccaccgacacagtaattt-tcct |
268 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||| ||| |
|
|
| T |
36236242 |
aagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgtcgccgtagatccagtctttttgatatcaccaccgacagggtaatttctccg |
36236143 |
T |
|
| Q |
269 |
gcaatctc--tatagaaactgtaaaacactttttgcctaaatttgtattcaatt-agttacttatcgatagagtagtattatggtattgcagaaatgaga |
365 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||| || |||| ||||||||||| ||||||| ||| |||||||||||||||| ||||||| || ||||| |
|
|
| T |
36236142 |
gcaatctcgttatagaaacagtaaaaaacttttttcccaaatgtgtattcaattaagttactaatcaatagagtagtattatgatattgcaaaactgaga |
36236043 |
T |
|
| Q |
366 |
tttaattt--tctgttatttattggttttctaattttgattcaagcaagtt |
414 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
36236042 |
tttaattttctctgttatttattggttttctaattttgattgaatcaagtt |
36235992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 33814196 - 33814368
Alignment:
| Q |
38 |
gaatggatcagggattccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaac |
137 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| | | |||||| |||| |||||||||||||| |
|
|
| T |
33814196 |
gaatggatcagggattccgtgcacggaggaagagcacaagctgtttttggttggattgcagaaagttggcatatgtgattagagaagaatctcaaggaac |
33814295 |
T |
|
| Q |
138 |
tatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgt |
218 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
33814296 |
tatgtgaaaacaagaacgcctacgc--------agtcatgctcagaagtactttctccgcctaagtaatttcaatcgccgt |
33814368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 33873666 - 33873838
Alignment:
| Q |
38 |
gaatggatcagggattccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaac |
137 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| | | |||||| |||| |||||||||||||| |
|
|
| T |
33873666 |
gaatggatcagggattccgtgcacggaggaagagcacaagctgtttttggttggattgcagaaagttggcatatgtgattagagaagaatctcaaggaac |
33873765 |
T |
|
| Q |
138 |
tatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgt |
218 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
33873766 |
tatgtgaaaacaagaacgcctacgc--------agtcatgctcagaagtactttctccgcctaagtaatttcaatcgccgt |
33873838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 33815090 - 33815131
Alignment:
| Q |
224 |
tagatccagtctctttgatatcaccaccgacacagtaatttt |
265 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
33815090 |
tagatccagtctctttgatatcaccactgacacaataatttt |
33815131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 33874560 - 33874601
Alignment:
| Q |
224 |
tagatccagtctctttgatatcaccaccgacacagtaatttt |
265 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
33874560 |
tagatccagtctctttgatatcaccactgacacaataatttt |
33874601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 52 - 262
Target Start/End: Original strand, 16190123 - 16190333
Alignment:
| Q |
52 |
ttccgtggacggaggaagagcataagttgttcttggttggattgcagaaagttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaag |
151 |
Q |
| |
|
|||| ||||| || ||||| || |||||||||||| | |||||||| ||||||| |||||||||||||||||||| || || |||| ||||||||| || |
|
|
| T |
16190123 |
ttccttggacagaagaagaacacaagttgttcttgttgggattgcaacaagttggtaaaggtgattggagaggaatttctagaaactttgtgaaaactag |
16190222 |
T |
|
| Q |
152 |
aacacctacgcaggttgcaagtcatgctcaaaagtactttctccgccgaagtaatctcaatcgccgtctccgtagatccagtctctttgatatcaccacc |
251 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| || |||||||| ||| | |||||||| | ||| |||||||||||||||||||| |||||| |
|
|
| T |
16190223 |
gacaccaactcaggttgcaagtcatgctcagaagtatttcctccgccgtcataaccagaatcgccgccgccggagatccagtctctttgatattaccacc |
16190322 |
T |
|
| Q |
252 |
gacacagtaat |
262 |
Q |
| |
|
|| || ||||| |
|
|
| T |
16190323 |
gatacggtaat |
16190333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 30470514 - 30470583
Alignment:
| Q |
411 |
agttcttctcatattataaataacttataatatggatcgcagcaactaatgcttcaattttatgttgtct |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
30470514 |
agttcttctcatattataaataacttataataaggattgcagcaactaatgcttcaattttatgctgtct |
30470583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 34848442 - 34848526
Alignment:
| Q |
103 |
ttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagta |
187 |
Q |
| |
|
|||||||||| |||||||| || ||||| || |||||||||| ||||||||||| || || |||||||| |||||||||||||| |
|
|
| T |
34848442 |
ttggaaaaggagattggaggggtatctctagaaactatgtgactacaagaacaccaacacaagttgcaagccatgctcaaaagta |
34848526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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