View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7693_high_3 (Length: 434)

Name: NF7693_high_3
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7693_high_3
NF7693_high_3
[»] chr5 (20 HSPs)
chr5 (17-284)||(7737041-7737308)
chr5 (287-419)||(12806991-12807125)
chr5 (287-419)||(25773654-25773788)
chr5 (287-425)||(10285189-10285329)
chr5 (287-425)||(30720624-30720764)
chr5 (289-425)||(40886742-40886880)
chr5 (289-425)||(36561231-36561369)
chr5 (287-419)||(37900762-37900896)
chr5 (293-419)||(7277560-7277688)
chr5 (320-419)||(25683366-25683467)
chr5 (287-414)||(16983263-16983393)
chr5 (330-417)||(30403101-30403191)
chr5 (287-417)||(734478-734609)
chr5 (332-405)||(23098386-23098461)
chr5 (287-417)||(39070888-39071020)
chr5 (341-417)||(16054173-16054249)
chr5 (286-417)||(11319563-11319696)
chr5 (342-417)||(1056422-1056498)
chr5 (287-331)||(15305216-15305260)
chr5 (24-93)||(7768105-7768171)
[»] chr8 (29 HSPs)
chr8 (287-425)||(43275531-43275669)
chr8 (289-419)||(30999661-30999791)
chr8 (287-425)||(40918863-40919001)
chr8 (286-419)||(2540069-2540204)
chr8 (287-425)||(11174355-11174495)
chr8 (287-425)||(40058435-40058575)
chr8 (287-415)||(3585456-3585586)
chr8 (291-425)||(11646457-11646593)
chr8 (287-425)||(37345576-37345716)
chr8 (289-425)||(7146920-7147058)
chr8 (287-425)||(36068085-36068225)
chr8 (287-419)||(27035002-27035135)
chr8 (287-425)||(20546421-20546559)
chr8 (286-412)||(28562425-28562554)
chr8 (330-417)||(28326797-28326883)
chr8 (340-417)||(13881094-13881174)
chr8 (286-335)||(10646596-10646645)
chr8 (287-335)||(8697898-8697946)
chr8 (330-419)||(37510314-37510405)
chr8 (287-335)||(41307961-41308009)
chr8 (287-335)||(45278701-45278749)
chr8 (286-412)||(28567923-28568051)
chr8 (286-412)||(28575516-28575644)
chr8 (287-335)||(40486453-40486501)
chr8 (289-417)||(35866621-35866751)
chr8 (340-386)||(26629182-26629228)
chr8 (341-412)||(10181002-10181074)
chr8 (340-417)||(39151464-39151542)
chr8 (332-380)||(30906869-30906917)
[»] chr3 (32 HSPs)
chr3 (287-425)||(36881287-36881425)
chr3 (287-425)||(198860-199000)
chr3 (287-425)||(13364848-13364988)
chr3 (287-425)||(19241800-19241940)
chr3 (287-425)||(23088063-23088203)
chr3 (287-425)||(46694242-46694382)
chr3 (289-425)||(3383083-3383221)
chr3 (287-419)||(29375143-29375277)
chr3 (291-419)||(43750146-43750276)
chr3 (276-401)||(13702762-13702890)
chr3 (289-377)||(32835138-32835226)
chr3 (287-360)||(27707363-27707436)
chr3 (287-335)||(44277455-44277503)
chr3 (299-367)||(48820444-48820512)
chr3 (334-417)||(19897067-19897152)
chr3 (287-384)||(37293442-37293539)
chr3 (287-335)||(12094587-12094635)
chr3 (332-408)||(44522491-44522567)
chr3 (341-412)||(37780996-37781069)
chr3 (279-351)||(48963152-48963223)
chr3 (287-335)||(19911514-19911562)
chr3 (373-425)||(27707120-27707172)
chr3 (289-417)||(53559750-53559880)
chr3 (333-408)||(1455297-1455374)
chr3 (291-335)||(4235760-4235803)
chr3 (287-335)||(38805250-38805298)
chr3 (371-417)||(18356007-18356053)
chr3 (371-412)||(6901655-6901696)
chr3 (330-425)||(26105079-26105176)
chr3 (291-335)||(4226716-4226759)
chr3 (287-323)||(19912174-19912210)
chr3 (287-323)||(38806341-38806377)
[»] chr6 (21 HSPs)
chr6 (287-419)||(7761306-7761438)
chr6 (287-425)||(29260197-29260337)
chr6 (287-419)||(1605584-1605718)
chr6 (289-425)||(30734615-30734753)
chr6 (287-425)||(8626487-8626627)
chr6 (288-419)||(13757214-13757347)
chr6 (297-419)||(31559874-31559998)
chr6 (287-419)||(15064832-15064966)
chr6 (288-395)||(30734772-30734879)
chr6 (291-425)||(17942452-17942590)
chr6 (297-419)||(8235639-8235763)
chr6 (287-425)||(4129440-4129572)
chr6 (333-417)||(21277574-21277659)
chr6 (287-335)||(19996715-19996763)
chr6 (331-417)||(14287038-14287125)
chr6 (340-393)||(33845449-33845502)
chr6 (330-410)||(3798151-3798233)
chr6 (333-412)||(11370630-11370711)
chr6 (332-417)||(26860819-26860902)
chr6 (287-323)||(19996327-19996363)
chr6 (377-417)||(30235447-30235487)
[»] scaffold1431 (1 HSPs)
scaffold1431 (280-425)||(31-179)
[»] chr7 (19 HSPs)
chr7 (287-425)||(27813816-27813956)
chr7 (287-419)||(10981513-10981647)
chr7 (287-425)||(36453256-36453396)
chr7 (289-425)||(25614485-25614621)
chr7 (287-419)||(47110456-47110588)
chr7 (289-419)||(40348967-40349099)
chr7 (340-409)||(16360442-16360511)
chr7 (332-417)||(16662146-16662231)
chr7 (332-417)||(17636506-17636591)
chr7 (330-412)||(7743542-7743625)
chr7 (330-412)||(3091565-3091649)
chr7 (332-417)||(37983206-37983289)
chr7 (287-335)||(25060133-25060181)
chr7 (342-419)||(27942177-27942256)
chr7 (287-335)||(2911548-2911596)
chr7 (340-419)||(3498892-3498973)
chr7 (348-406)||(27021566-27021624)
chr7 (275-323)||(2910851-2910900)
chr7 (371-408)||(28200298-28200335)
[»] chr1 (39 HSPs)
chr1 (287-425)||(23045411-23045551)
chr1 (289-425)||(47037984-47038120)
chr1 (287-415)||(284338-284468)
chr1 (287-425)||(40783789-40783929)
chr1 (275-419)||(321618-321765)
chr1 (287-419)||(24772043-24772177)
chr1 (287-419)||(27211102-27211236)
chr1 (280-419)||(23526237-23526379)
chr1 (289-419)||(46771644-46771776)
chr1 (302-419)||(33082765-33082884)
chr1 (297-419)||(52037260-52037382)
chr1 (333-408)||(1837978-1838053)
chr1 (332-419)||(1749357-1749446)
chr1 (330-417)||(52478016-52478103)
chr1 (341-421)||(7765072-7765154)
chr1 (330-417)||(34458863-34458950)
chr1 (287-335)||(3943065-3943113)
chr1 (287-335)||(9588675-9588723)
chr1 (287-335)||(41959083-41959131)
chr1 (287-417)||(51064893-51065028)
chr1 (289-335)||(13984991-13985037)
chr1 (332-417)||(27143151-27143239)
chr1 (330-417)||(31003926-31004012)
chr1 (330-409)||(40261419-40261501)
chr1 (342-405)||(40562733-40562797)
chr1 (330-402)||(3657125-3657199)
chr1 (341-417)||(18396754-18396832)
chr1 (287-323)||(9589631-9589667)
chr1 (341-409)||(25929173-25929241)
chr1 (296-348)||(40564241-40564293)
chr1 (287-323)||(44227853-44227889)
chr1 (287-335)||(44228228-44228276)
chr1 (330-365)||(14351954-14351989)
chr1 (350-417)||(24876633-24876699)
chr1 (350-417)||(31061594-31061662)
chr1 (290-335)||(1168369-1168414)
chr1 (329-406)||(21623680-21623756)
chr1 (287-323)||(3943763-3943799)
chr1 (287-323)||(41959809-41959845)
[»] chr4 (26 HSPs)
chr4 (289-425)||(24706379-24706517)
chr4 (287-419)||(25704656-25704790)
chr4 (287-419)||(21310430-21310564)
chr4 (287-425)||(14261049-14261189)
chr4 (289-419)||(22321405-22321537)
chr4 (287-419)||(12071566-12071700)
chr4 (287-425)||(40122617-40122757)
chr4 (287-419)||(34324720-34324855)
chr4 (289-425)||(44568844-44568982)
chr4 (287-425)||(21661667-21661807)
chr4 (287-425)||(21670431-21670571)
chr4 (289-425)||(50767871-50768009)
chr4 (288-419)||(20249151-20249283)
chr4 (287-419)||(31892243-31892373)
chr4 (292-395)||(1988046-1988150)
chr4 (333-417)||(32543532-32543617)
chr4 (330-417)||(20714488-20714577)
chr4 (288-409)||(26676714-26676837)
chr4 (332-412)||(6129093-6129175)
chr4 (354-419)||(21064834-21064899)
chr4 (330-417)||(19692771-19692860)
chr4 (330-417)||(19703356-19703445)
chr4 (330-417)||(48652268-48652356)
chr4 (342-403)||(34284171-34284234)
chr4 (297-335)||(19361662-19361700)
chr4 (348-417)||(51777687-51777755)
[»] chr2 (19 HSPs)
chr2 (287-425)||(23366794-23366934)
chr2 (287-425)||(39938175-39938315)
chr2 (287-419)||(3518913-3519047)
chr2 (287-425)||(1102508-1102648)
chr2 (310-425)||(1646317-1646432)
chr2 (287-419)||(12969877-12970011)
chr2 (287-407)||(37673887-37674009)
chr2 (359-419)||(22388273-22388335)
chr2 (287-335)||(34224378-34224426)
chr2 (340-407)||(39562037-39562104)
chr2 (341-417)||(14779838-14779914)
chr2 (330-417)||(19976380-19976468)
chr2 (330-395)||(35179097-35179164)
chr2 (345-412)||(34242040-34242107)
chr2 (330-417)||(18078104-18078193)
chr2 (357-434)||(4917839-4917915)
chr2 (333-417)||(32840312-32840401)
chr2 (292-417)||(1002870-1002997)
chr2 (345-406)||(14117753-14117814)
[»] scaffold0054 (1 HSPs)
scaffold0054 (287-419)||(45459-45593)
[»] scaffold0062 (1 HSPs)
scaffold0062 (297-419)||(403-525)
[»] scaffold1770 (1 HSPs)
scaffold1770 (287-425)||(175-307)
[»] scaffold0056 (1 HSPs)
scaffold0056 (332-417)||(70874-70961)
[»] scaffold0257 (1 HSPs)
scaffold0257 (287-335)||(23472-23520)
[»] scaffold0025 (1 HSPs)
scaffold0025 (348-419)||(65301-65375)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 7737308 - 7737041
Alignment:
Q  17 actaaccaatgtccaaattacgttcaccgtgttcaccatgtttgattatatttgtttgtgtctattgtgattgcactggctttctcttttgtactaatgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7737308 actaaccaatgtccaaattacgttcaccgtgttcaccatgtttgattatatttgtttgtgtctattgtgattgcactggctttctcttttgtattaatgt 7737209  T
Q  117 tttaagcaatgaagtatgtgcatgccacttgctatagtagtaaatagtgtgctacgaattatttgtatctagctaccaactaacacatttgagtaaatgg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737208 tttaagcaatgaagtatgtgcatgccacttgctatagtagtaaatagtgtgctacgaattatttgtatctagctaccaactaacacatttgagtaaatgg 7737109  T
Q  217 aatgcatgaatgcgacgtcatgcccgtatggatgaggcattggtaagtgtgttgatcataaaaatata 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737108 aatgcatgaatgcgacgtcatgcccgtatggatgaggcattggtaagtgtgttgatcataaaaatata 7737041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 12807125 - 12806991
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  12807125 cctccgtttcaaaatacatgtccattttggagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 12807026  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||||||||    
T  12807025 aatacccttaatcatttattatttcattttatttt 12806991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 25773654 - 25773788
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  25773654 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 25773753  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||||||||    
T  25773754 aatacccttaatcatttattatttcattttatttt 25773788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 10285329 - 10285189
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  10285329 cctccgtttcaaaatagatgtctattttggagaaattgcattaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 10285230  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  10285229 aatacccttaatcatttattatttcattttatttttttctc 10285189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 30720764 - 30720624
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||    
T  30720764 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttat 30720665  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  30720664 aatacccttaatcatctattatttcattttatttttttctc 30720624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 289 - 425
Target Start/End: Complemental strand, 40886880 - 40886742
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctataa 386  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||  ||||||||||    
T  40886880 tccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcgaataaattttgttatttttgatgaaaatatgtgtgtattttctataa 40886781  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  40886780 tacccttaatcatttattatttcattttatttttttctc 40886742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 289 - 425
Target Start/End: Complemental strand, 36561369 - 36561231
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 386  Q
    |||||||||||||||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  36561369 tccgtttcaaaatacatgtccattttagaaaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 36561270  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    |||| |||| ||||||||||||||||||||||| |||||    
T  36561269 tacctttaaccatttattatttcattttatttttttctc 36561231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 37900896 - 37900762
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 384  Q
    ||||||||||||||||||  || ||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||    
T  37900896 cctccgtttcaaaatacacatccattttggagaaattgcagtaaccaagaaactaaataaattttgatatttttgatgaaattatatgtgtgttttctat 37900797  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||| |||||||||||||||| ||||||    
T  37900796 aatacccttaaccatttattatttcattctatttt 37900762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 293 - 419
Target Start/End: Complemental strand, 7277688 - 7277560
Alignment:
Q  293 tttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacc 390  Q
    |||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| |||  || ||||||||||||||||||||    
T  7277688 tttcaaaatacatgtctattttggagaaattggagtaaccaataaaccaaataaattttgttatttttgatcaaattatgtgtgtgttttctataatacc 7277589  T
Q  391 cttaatcatttattatttcattttatttt 419  Q
     |||| |||||||||||||||| ||||||    
T  7277588 tttaaccatttattatttcattatatttt 7277560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 320 - 419
Target Start/End: Complemental strand, 25683467 - 25683366
Alignment:
Q  320 aattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||  || ||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  25683467 aattgcaataaccaagaaaccaaataaattttgttatttttgataaaattatgtgtgtgttttctataatacccttaaccatttattattttattctatt 25683368  T
Q  418 tt 419  Q
    ||    
T  25683367 tt 25683366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 414
Target Start/End: Original strand, 16983263 - 16983393
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataa--attttgttatttttgatgaaa--atatgtgtgttttct 382  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||   |||| || ||||||||||||  |||||||| ||||||    
T  16983263 cctctgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttttttttttgatgaaatgatatgtgttttttct 16983362  T
Q  383 ataatacccttaatcatttattatttcatttt 414  Q
    | ||||||||||| || ||||||||| |||||    
T  16983363 acaatacccttaacca-ttattattttatttt 16983393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 30403191 - 30403101
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtg---tgttttctataatacccttaatcatttattatttcattttatt 417  Q
    |||||||||||||||||||||||||||||||||||||| | ||||   | ||||||||||||| ||||||||||| |||||||||||||||    
T  30403191 accaagaaaccaaataaattttgttatttttgatgaaattctgtgtttttttttctataatactcttaatcatttgttatttcattttatt 30403101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 417
Target Start/End: Complemental strand, 734609 - 734478
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt-ctata 385  Q
    ||||||||||| ||||| |||| |||||| ||||||| | |  |||||  || |||||||||||||| ||| ||||||||| | | |||||||| |||||    
T  734609 cctccgtttcacaatacttgtccattttgaagaaattactcataccaaagaatcaaataaattttgtcattattgatgaaattctttgtgtttttctata 734510  T
Q  386 atacccttaatcatttattatttcattttatt 417  Q
    ||||||||| ||||||||||||||||| ||||    
T  734509 atacccttactcatttattatttcattctatt 734478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 332 - 405
Target Start/End: Complemental strand, 23098461 - 23098386
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaaatatgtg--tgttttctataatacccttaatcatttatta 405  Q
    |||||||| ||||||||||||||||||||||||||| ||||||  ||||| ||||||||||||||| |||||||||    
T  23098461 caagaaactaaataaattttgttatttttgatgaaattatgtgcatgtttcctataatacccttaaccatttatta 23098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 417
Target Start/End: Original strand, 39070888 - 39071020
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 384  Q
    ||||||||||| ||||| |||  |||||| ||||||| |||  |  ||| || ||||||||| |||| |||||||||||||     ||||| ||||||||    
T  39070888 cctccgtttcacaatacttgttcattttgaagaaattacacatattaaggaatcaaataaatgttgtcatttttgatgaaatctgttgtgttttttctat 39070987  T
Q  385 aatacccttaatcatttattatttcattttatt 417  Q
    |||||||||| ||||||||||||||||| ||||    
T  39070988 aatacccttactcatttattatttcattctatt 39071020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 417
Target Start/End: Original strand, 16054173 - 16054249
Alignment:
Q  341 aaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    |||||||||||||||||||| |||||| | ||||| |||||||||||| |||| | |||||||||||| ||| ||||    
T  16054173 aaataaattttgttattttttatgaaattttgtgttttttctataatatccttgaccatttattattttattctatt 16054249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 417
Target Start/End: Original strand, 11319563 - 11319696
Alignment:
Q  286 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttcta 383  Q
    |||||||||||| ||||  |||| |||||| ||||||| |||  || ||  || ||||||||| |||| |||||| ||||||   | ||| | |||||||    
T  11319563 tcctccgtttcacaatatttgtccattttgaagaaattacacatactaatgaatcaaataaatgttgtaattttttatgaaattctttgttttttttcta 11319662  T
Q  384 taatacccttaatcatttattatttcattttatt 417  Q
    ||||||||||| ||||||||||||||||| ||||    
T  11319663 taatacccttactcatttattatttcattctatt 11319696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 1056498 - 1056422
Alignment:
Q  342 aataaattttgttatttttgatgaaaatatgtgtgtttt-ctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||||||||||||| |||||| | | |||||||| |||||||||  || |||||||||||||||||| ||||    
T  1056498 aataaattttgttatttttaatgaaattctttgtgtttttctataatactattgatcatttattatttcattatatt 1056422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 15305260 - 15305216
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaac 331  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  15305260 cctccgtttcaaaatacatgtccattttggagaaattgcagtaac 15305216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 7768171 - 7768105
Alignment:
Q  24 aatgtccaaattacgttcaccgtgttcaccatgtttgattatatttgtttgtgtctattgtgattgcact 93  Q
    |||| |||||||||||||||| |||||||||||||| |||| |||||||  | |||||||||||||||||    
T  7768171 aatgaccaaattacgttcaccatgttcaccatgtttaatta-atttgtt--tttctattgtgattgcact 7768105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 43275669 - 43275531
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 386  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275669 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 43275570  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  43275569 tacccttaatcatttattatttcattttatttttttctc 43275531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 289 - 419
Target Start/End: Complemental strand, 30999791 - 30999661
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 388  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30999791 tccgtttcaaaatacatgtcaattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 30999692  T
Q  389 cccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||||    
T  30999691 cccttaatcatttattatttcattttatttt 30999661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 40919001 - 40918863
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 386  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  40919001 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaacatgtgtgttttctataa 40918902  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  40918901 tacccttaatcatttattatttcattttatttttttctc 40918863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 286 - 419
Target Start/End: Complemental strand, 2540204 - 2540069
Alignment:
Q  286 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttcta 383  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2540204 tcctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttcta 2540105  T
Q  384 taatacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||||||||||||||||||||||||||||    
T  2540104 taatacccttaatcatttattatttcattttatttt 2540069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 11174495 - 11174355
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  11174495 cctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 11174396  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11174395 aatacccttaatcatttattatttcattttatttttttctc 11174355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 40058575 - 40058435
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  40058575 cctccgtttcaaaatacatgtccatttcggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 40058476  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  40058475 aatacccttaatcatttattatttcattttatttttttctc 40058435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 287 - 415
Target Start/End: Original strand, 3585456 - 3585586
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  3585456 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctat 3585555  T
Q  385 aatacccttaatcatttattatttcatttta 415  Q
    |||||||||||||||||||||||||||||||    
T  3585556 aatacccttaatcatttattatttcatttta 3585586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 291 - 425
Target Start/End: Complemental strand, 11646593 - 11646457
Alignment:
Q  291 cgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataata 388  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  11646593 cgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataata 11646494  T
Q  389 cccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  11646493 cccttaatcatttattatttcattttacttttttctc 11646457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 37345576 - 37345716
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  37345576 cctccgtttcaaaatacatgtccattttgaagaaattgcaccaaccaagaaaccaaataaattttgttatttttaatgaaaatatgtgtgtgttttctat 37345675  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  37345676 aatacccttaatcatttattatttcattttatttttttctc 37345716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 289 - 425
Target Start/End: Original strand, 7146920 - 7147058
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctataa 386  Q
    |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  7146920 tccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataa 7147019  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  7147020 tacccttaatcatttattatttcattttatttttttctc 7147058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 36068085 - 36068225
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  36068085 cctccgtttcaaaatacatgtccattttggaggaattgtactaaccaaaaaaccaaataaattttgttatttttaatgaaaatatatgtgtgttttctat 36068184  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    |||||||||||||||| |||||||||||||| ||| |||||    
T  36068185 aatacccttaatcattaattatttcattttacttttttctc 36068225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 27035002 - 27035135
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt-tttctata 385  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||| ||| ||||||||    
T  27035002 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttatttttgatgaaattatgtctgtgtttctata 27035101  T
Q  386 atacccttaatcatttattatttcattttatttt 419  Q
    |||||||||| |||||||||||||||| ||||||    
T  27035102 atacccttaaccatttattatttcattctatttt 27035135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 20546559 - 20546421
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 386  Q
    ||||| |||||||||| ||||| |||||| ||||||||||  || |||||||  ||||||||||||||||||||||||||| |||||||||||| ||| |    
T  20546559 cctccatttcaaaatatatgtccattttgaagaaattgcaacaatcaagaaattaaataaattttgttatttttgatgaaattatgtgtgttttatatga 20546460  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    |||||||||  ||||||||||||||| |||||| |||||    
T  20546459 tacccttaacaatttattatttcattatatttttttctc 20546421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 286 - 412
Target Start/End: Original strand, 28562425 - 28562554
Alignment:
Q  286 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg---ttttct 382  Q
    |||||||||||||||||| |||| |||||| ||||||| |||  |||||| || ||||||||| |||| ||||||||||||| | | ||||   ||||||    
T  28562425 tcctccgtttcaaaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgtttttttct 28562524  T
Q  383 ataatacccttaatcatttattatttcatt 412  Q
    |||||||||||| |||||||| ||||||||    
T  28562525 ataatacccttactcatttatgatttcatt 28562554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 28326883 - 28326797
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||  ||||||||||||||| ||||    
T  28326883 accaagaaatcaaataaattttgttatttttgatgaaattatgtgt-ttttcaataatactcttaactatttattatttcattctatt 28326797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 13881174 - 13881094
Alignment:
Q  340 caaataaattttgttatttttgatgaaaatatgtgtgtttt---ctataatacccttaatcatttattatttcattttatt 417  Q
    |||||||||||||||||||||||||||| | |||| |||||   |||||||||||||||||||||||||||||||| ||||    
T  13881174 caaataaattttgttatttttgatgaaattgtgtgcgtttttttctataatacccttaatcatttattatttcattatatt 13881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 10646596 - 10646645
Alignment:
Q  286 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  10646596 tcctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 10646645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 8697946 - 8697898
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  8697946 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 8697898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 419
Target Start/End: Original strand, 37510314 - 37510405
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttct--ataatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||| |||||||||||||||||||| || ||| | | | | |||| |  |||||||||||||||||||| ||||||||||||||||    
T  37510314 accaagaaactaaataaattttgttatttttaataaaattctttctattttttcaataatacccttaatcatttaatatttcattttatttt 37510405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 41308009 - 41307961
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  41308009 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 41307961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 45278749 - 45278701
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  45278749 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 45278701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 412
Target Start/End: Original strand, 28567923 - 28568051
Alignment:
Q  286 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg---ttttct 382  Q
    |||||||||||||||||| |||| |||||| ||||||| |||  |||||  || ||||||||| |||| |||||| |||||| | | ||||   ||||||    
T  28567923 tcctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttct 28568022  T
Q  383 ataatacccttaatcatttattatttcatt 412  Q
    ||||||||| |  |||||||||||||||||    
T  28568023 ataataccc-tgctcatttattatttcatt 28568051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 412
Target Start/End: Original strand, 28575516 - 28575644
Alignment:
Q  286 tcctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg---ttttct 382  Q
    |||||||||||||||||| |||| |||||| ||||||| |||  |||||  || ||||||||| |||| |||||| |||||| | | ||||   ||||||    
T  28575516 tcctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttct 28575615  T
Q  383 ataatacccttaatcatttattatttcatt 412  Q
    ||||||||| |  |||||||||||||||||    
T  28575616 ataataccc-tgctcatttattatttcatt 28575644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 40486501 - 40486453
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||||    
T  40486501 cctccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaag 40486453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 417
Target Start/End: Original strand, 35866621 - 35866751
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt--ctataa 386  Q
    ||||||||| ||||| |||| |||||  |||||||  |   |||||||||  | |||||| ||||||||||| |||||| | | ||||||||  ||||||    
T  35866621 tccgtttcacaatacttgtccattttaaagaaattatatataccaagaaattagataaatgttgttatttttcatgaaattctttgtgttttttctataa 35866720  T
Q  387 tacccttaatcatttattatttcattttatt 417  Q
    ||||||||| |||||||||||| ||| ||||    
T  35866721 tacccttaaacatttattattttattctatt 35866751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 386
Target Start/End: Complemental strand, 26629228 - 26629182
Alignment:
Q  340 caaataaattttgttatttttgatgaaaatatgtgtgttttctataa 386  Q
    ||||||||||||||||| |||||||||| ||||||| ||||||||||    
T  26629228 caaataaattttgttatgtttgatgaaattatgtgttttttctataa 26629182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 412
Target Start/End: Complemental strand, 10181074 - 10181002
Alignment:
Q  341 aaataaattttgttatttttgatgaaaatatgtgtgttttct-ataatacccttaatcatttattatttcatt 412  Q
    |||||||||||||||||||| || ||| || || |||||| | |||||||| |||| ||||||||||||||||    
T  10181074 aaataaattttgttattttttataaaattacgtttgtttttttataataccgttaaccatttattatttcatt 10181002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 39151464 - 39151542
Alignment:
Q  340 caaataaattttgttatttttgatgaaaatatgt-gtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    |||||||| ||||||||||||||||||| |||||  | ||||||||||||   || |||||||||||||| ||| ||||    
T  39151464 caaataaactttgttatttttgatgaaattatgtatttttttctataatataatttatcatttattattttattctatt 39151542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 30906917 - 30906869
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt 380  Q
    ||||||| ||||||||||||||||||||| |||||| | |||| |||||    
T  30906917 caagaaatcaaataaattttgttattttttatgaaattttgtgagtttt 30906869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 36881287 - 36881425
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 386  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881287 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 36881386  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  36881387 tacccttaattatttattatttcattttatttttttctc 36881425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 198860 - 199000
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  198860 cctccgtttcaaaatacatgtccattttggagaaattgcactgaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctat 198959  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  198960 aatacccttaatcatttattatttcattttatttttttctc 199000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 13364848 - 13364988
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  13364848 cctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 13364947  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  13364948 aatacccttaatcatttattatttcattttatttttttctc 13364988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 19241940 - 19241800
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  19241940 cctccgtttcaaaatacatgtccattttggtgaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctat 19241841  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  19241840 aatacccttaatcatttattatttcattttacttttttctc 19241800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 23088203 - 23088063
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    |||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  23088203 cctctgtttcaaaatatatgtctattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 23088104  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  23088103 aatacccttaatcatttattatttcattttatttttttctc 23088063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 46694382 - 46694242
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  46694382 cctccgtttcaaaatacatgtcctttttggagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 46694283  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  46694282 aatacccttaatcatttattatttcattttatttttttctc 46694242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 289 - 425
Target Start/End: Original strand, 3383083 - 3383221
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctataa 386  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  3383083 tccgtttcaaaatatatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 3383182  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  3383183 tacccttaaacatttattatttcattttatttttttctc 3383221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 29375143 - 29375277
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  29375143 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttcttatttttgatgaaaatatgtgtgtgttttctat 29375242  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||| ||||||||||||| |||| ||||    
T  29375243 aatacccttaaccatttattatttctttttttttt 29375277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 291 - 419
Target Start/End: Original strand, 43750146 - 43750276
Alignment:
Q  291 cgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataata 388  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  43750146 cgtttcaaaatacatgtccattttggagaaattggagtaaccaagaaaccaaataaattttgttatttttgatgaaattatatgtgtgttttctataata 43750245  T
Q  389 cccttaatcatttattatttcattttatttt 419  Q
    | ||||| |||||||||||||||| ||||||    
T  43750246 cacttaaccatttattatttcattctatttt 43750276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 276 - 401
Target Start/End: Original strand, 13702762 - 13702890
Alignment:
Q  276 aaaaatatactcc-tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatg 372  Q
    ||||| ||||||| ||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||  |||||    
T  13702762 aaaaagatactccatccattttaaaatacatgcctattttggagaaattgcagtaaccaagaaaccaaataaattttgatatttttgatgaaattatatg 13702861  T
Q  373 tgtgttttctataatacccttaatcattt 401  Q
    | |||||||||||||||| |||| |||||    
T  13702862 tttgttttctataatacctttaaccattt 13702890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 32835226 - 32835138
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt 377  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  32835226 tccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaacaaataaattttgttatttttgatgaaattatgtgtgt 32835138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 27707436 - 27707363
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttattttt 360  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27707436 cctccgtttcgaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttattttt 27707363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 44277503 - 44277455
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44277503 cctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 44277455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 48820512 - 48820444
Alignment:
Q  299 aatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa 367  Q
    ||||||||| ||||||||||||||| |  || |||| ||||||||||||||||||||||||||||||||    
T  48820512 aatacatgtttattttggagaaattacggtatccaataaaccaaataaattttgttatttttgatgaaa 48820444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 417
Target Start/End: Complemental strand, 19897152 - 19897067
Alignment:
Q  334 agaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcattttatt 417  Q
    ||||| ||||||||||||||||||||| |||||| | | ||||||||  |||||||||||||| || |||||||||||||| ||||    
T  19897152 agaaatcaaataaattttgttattttttatgaaattctttgtgttttttctataatacccttactcttttattatttcattctatt 19897067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 384
Target Start/End: Original strand, 37293442 - 37293539
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctat 384  Q
    ||||||||||| ||||| |||| |||||| ||||||| |||  |||||| || ||||||||| |||| ||||||||||||| | ||||| ||||||||    
T  37293442 cctccgtttcacaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctgtgttttttctat 37293539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 12094587 - 12094635
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  12094587 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 12094635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 44522491 - 44522567
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattattt 408  Q
    ||||||| |||||||||||| |||||||| ||||||  |||||| |||||||||||||  |||| ||||||||||||    
T  44522491 caagaaatcaaataaattttattattttttatgaaatcatgtgttttttctataatacttttaaccatttattattt 44522567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 37780996 - 37781069
Alignment:
Q  341 aaataaattttgttatttttgatgaaaatatgtgtg--ttttctataatacccttaatcatttattatttcatt 412  Q
    ||||||||||| ||||||||||||||| | ||||||  |||||||||||||  |||| ||||||||||||||||    
T  37780996 aaataaattttattatttttgatgaaattctgtgtgttttttctataatactattaaccatttattatttcatt 37781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 48963152 - 48963223
Alignment:
Q  279 aatatactcc-tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaatttt 351  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||  |||||||| ||| ||||||| ||||    
T  48963152 aatatactccctccgtttcaaaatacatatctattttggagaaattg--ctaaccaataaatcaaataattttt 48963223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 19911514 - 19911562
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  19911514 cctccgtttcaaaatacatgttcattttggagaaattgcagtaaccaag 19911562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 27707172 - 27707120
Alignment:
Q  373 tgtgttttctataatacccttaatcatttattatttcattttattttcttctc 425  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||||| |||||    
T  27707172 tgtgttttctataatatccttaaccatttattatttctttttatttttttctc 27707120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 417
Target Start/End: Complemental strand, 53559880 - 53559750
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctata--a 386  Q
    ||||||||| ||||| |||   ||||| ||||||| |||  | ||||||| ||||||||| |||||||||||||||||| | | |||||||| | ||  |    
T  53559880 tccgtttcacaatacttgttgcttttgaagaaattacacatatcaagaaaacaaataaatgttgttatttttgatgaaattctctgtgttttatttacga 53559781  T
Q  387 tacccttaatcatttattatttcattttatt 417  Q
    || |||||  | |||||||||||||||||||    
T  53559780 tatccttacccgtttattatttcattttatt 53559750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 408
Target Start/End: Complemental strand, 1455374 - 1455297
Alignment:
Q  333 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtt--ttctataatacccttaatcatttattattt 408  Q
    |||||| |||||||||||||||||||||||| ||| ||| ||||||  ||||||||| | ||| | ||||||||||||    
T  1455374 aagaaatcaaataaattttgttatttttgataaaattatttgtgtttcttctataattctcttcaccatttattattt 1455297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 4235760 - 4235803
Alignment:
Q  291 cgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  4235760 cgtttcaaaatacatgtcg-ttttggagaaattgcactaaccaag 4235803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 38805250 - 38805298
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    ||||||||| |||||||||||| ||||| ||||||||||| ||||||||    
T  38805250 cctccgttttaaaatacatgtccattttagagaaattgcagtaaccaag 38805298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 18356053 - 18356007
Alignment:
Q  371 tgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||| |||||||||||||||||| |||||||| |||||||| ||||    
T  18356053 tgtgttttttctataatacccttactcatttatcatttcattctatt 18356007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 6901655 - 6901696
Alignment:
Q  371 tgtgtgttttctataatacccttaatcatttattatttcatt 412  Q
    ||||| |||||| ||||||||||| |||||||||||||||||    
T  6901655 tgtgttttttctctaatacccttactcatttattatttcatt 6901696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 425
Target Start/End: Original strand, 26105079 - 26105176
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgt-gtgttttct-ataatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||| ||| ||||||||||||||||||||| ||||   | | | ||||||| | | ||||||||||| |||||||||||||||| |||||| |||||    
T  26105079 accaataaatcaaataaattttgttatttttaatgatttttttttgtgtttttttacaatacccttaaccatttattatttcattatatttttttctc 26105176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 4226716 - 4226759
Alignment:
Q  291 cgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||    
T  4226716 cgtttcaaaatacatgtcg-ttttggagaaattgcagtaaccaag 4226759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 19912210 - 19912174
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaatt 323  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  19912210 cctccgtttcaaaatacatgtccattttagagaaatt 19912174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 38806377 - 38806341
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaatt 323  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  38806377 cctccgtttcaaaatacatgtccattttagagaaatt 38806341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 7761306 - 7761438
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 386  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7761306 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 7761405  T
Q  387 tacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||||||    
T  7761406 tacccttaatcatttattatttcattttatttt 7761438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 29260197 - 29260337
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  29260197 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 29260296  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  29260297 aatacccttaatcatttattatttcattttatttttttctc 29260337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 1605584 - 1605718
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  1605584 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 1605683  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||||||||    
T  1605684 aatacccttaatcatttattatttcattttatttt 1605718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 289 - 425
Target Start/End: Complemental strand, 30734753 - 30734615
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 386  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  30734753 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 30734654  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  30734653 tacccttaatcatttattatttcattttatttttttctc 30734615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 8626487 - 8626627
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  8626487 cctccgtttcaaaatacatgtccattttgaagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 8626586  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  8626587 aatacccttaatcatttattatttcattttatttttttctc 8626627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 288 - 419
Target Start/End: Original strand, 13757214 - 13757347
Alignment:
Q  288 ctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctata 385  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  13757214 ctccgtttcaaaatacatgtccattttggagaaattacactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctata 13757313  T
Q  386 atacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||||| ||||||||||||||||||||    
T  13757314 atacccttaatcaattattatttcattttatttt 13757347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 297 - 419
Target Start/End: Complemental strand, 31559998 - 31559874
Alignment:
Q  297 aaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtg--tgttttctataataccctta 394  Q
    |||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  31559998 aaaatacatgtccattttggagaaattgcattaaccaaaaaatcaaataaattttgttatttttgatgaaaatatgtgtatgttttctgtaataccctta 31559899  T
Q  395 atcatttattatttcattttatttt 419  Q
    |||||||||||||||||||| ||||    
T  31559898 atcatttattatttcattttttttt 31559874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 15064966 - 15064832
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||  || |||||||||| |||    
T  15064966 cctccgtttcaaaatacatgtccattttagagaaattgcagcaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgttttttat 15064867  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    | ||||||||| |||||||||||| ||| ||||||    
T  15064866 actacccttaaccatttattatttgattatatttt 15064832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 288 - 395
Target Start/End: Complemental strand, 30734879 - 30734772
Alignment:
Q  288 ctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataat 387  Q
    ||||||||||||||||||||| |||||| |||||||||| |||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  30734879 ctccgtttcaaaatacatgtccattttgaagaaattgcagtaacaaaaaaatcaaataaattttgttatttttgatgaaattatgtgtgttttctataat 30734780  T
Q  388 acccttaa 395  Q
    ||||||||    
T  30734779 acccttaa 30734772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 291 - 425
Target Start/End: Original strand, 17942452 - 17942590
Alignment:
Q  291 cgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaata--aattttgttatttttgatgaaaatatgt--gtgttttctataa 386  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||    |||| ||||||||||||||| |||||  ||||| |||||||    
T  17942452 cgtttcaaaatacatgtccatttttgagaaattgcagtaaccaagaaaccaaatatttttttttttatttttgatgaaattatgtgcgtgttctctataa 17942551  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  17942552 tacccttaaccatttattatttcattttatttttttctc 17942590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 297 - 419
Target Start/End: Original strand, 8235639 - 8235763
Alignment:
Q  297 aaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataataccctta 394  Q
    |||||||||||  |||||| |||||||||| |||||||||||| ||||||| |||||||||||| |||| |  || ||||||||||||||||||||||||    
T  8235639 aaaatacatgtacattttgaagaaattgcagtaaccaagaaacgaaataaaatttgttattttttatgatattatgtgtgtgttttctataataccctta 8235738  T
Q  395 atcatttattatttcattttatttt 419  Q
    |||||||||||||||||| ||||||    
T  8235739 atcatttattatttcattctatttt 8235763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 4129440 - 4129572
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtg--tgttttctat 384  Q
    ||||||||||||||||||| || | ||||||||||||||| |||||||        |||||||||||||||||| |||||||||||||  ||||||||||    
T  4129440 cctccgtttcaaaatacatatccactttggagaaattgcagtaaccaa--------ataaattttgttattttttatgaaaatatgtgtgtgttttctat 4129531  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  4129532 aatacccttaaccatttattatttcattttatttttttctc 4129572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 21277659 - 21277574
Alignment:
Q  333 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtg-ttttctataatacccttaatcatttattatttcattttatt 417  Q
    |||||| ||||||||||||||||||||| |||||||| | |||| |||||||||||||||||||| ||||| || |||||| ||||    
T  21277659 aagaaatcaaataaattttgttattttttatgaaaatttatgtgtttttctataatacccttaattatttagtacttcattctatt 21277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 19996763 - 19996715
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19996763 cctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 19996715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 417
Target Start/End: Original strand, 14287038 - 14287125
Alignment:
Q  331 ccaagaaaccaaataaattttgttatttttgatgaaaatatgtg-tgttttctataatacccttaatcatttattatttcattttatt 417  Q
    |||| ||| ||||||||||||||||||||| |||||| | |||| | ||||||||||||||||||  | |||||||||||||||||||    
T  14287038 ccaataaatcaaataaattttgttattttttatgaaattctgtgcttttttctataatacccttacccctttattatttcattttatt 14287125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 33845502 - 33845449
Alignment:
Q  340 caaataaattttgttatttttgatgaaaatatgtgtgttttctataataccctt 393  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||| |||||||    
T  33845502 caaataaattttgttatttttgatgaaattatgtattttttctatagtaccctt 33845449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 3798151 - 3798233
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaa--aatatgtgtgttttctataatacccttaatcatttattatttca 410  Q
    ||||| ||| ||||||||||||||||||||| |||||   || ||||| |||||||||| |||||||  ||||||||||||||    
T  3798151 accaaaaaatcaaataaattttgttatttttcatgaagttatttgtgttttttctataacacccttacacatttattatttca 3798233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 412
Target Start/End: Complemental strand, 11370711 - 11370630
Alignment:
Q  333 aagaaaccaaataaattttgttatttttgatgaaaat--atgtgtgttttctataatacccttaatcatttattatttcatt 412  Q
    |||||| |||||||||||||||||||||||||| | |   ||||| |||| |||||||| ||||| ||||||||||| ||||    
T  11370711 aagaaatcaaataaattttgttatttttgatgatattcattgtgttttttttataatactcttaaccatttattattccatt 11370630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 26860819 - 26860902
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||| ||||||| |||| ||||||||||||||| | ||||| | |||||||  |||||||| |||||||||||| ||| ||||    
T  26860819 caagaaatcaaataactttttttatttttgatgaaattttgtgtttattctata--acccttaaccatttattattttattctatt 26860902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 19996327 - 19996363
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaatt 323  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  19996327 cctccgtttcaaaatacatgtccattttagagaaatt 19996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 30235487 - 30235447
Alignment:
Q  377 ttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||| ||| |||||||||||||||||||||| ||||    
T  30235487 ttttctatattactcttaatcatttattatttcattctatt 30235447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 179 - 31
Alignment:
Q  280 atatactc-ctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtg 376  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  179 atatactctctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 80  T
Q  377 ttttctataatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  79 ttttctataatacccttaatcatttattatttcattttatttttttctc 31  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 27813816 - 27813956
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatg--tgtgttttctat 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  27813816 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtatgtgttttctat 27813915  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  27813916 aatacccttaatcatttattatttcattttatttttttctc 27813956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 10981513 - 10981647
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  10981513 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 10981612  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||||||||    
T  10981613 aatacccttaatcatttattatttcattttatttt 10981647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 36453396 - 36453256
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctat 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||    
T  36453396 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgttttttctat 36453297  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  36453296 aatacccttaatcatttattatttcattttatttttttctc 36453256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 289 - 425
Target Start/End: Complemental strand, 25614621 - 25614485
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 388  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  25614621 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctgaaata 25614522  T
Q  389 cccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||| |||||    
T  25614521 cccttaatcatttattatttcattttatttttttctc 25614485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 47110456 - 47110588
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 386  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47110456 cctccatttcaaaatacatgtccattttggagaaattgcactaaccaagaaacaaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 47110555  T
Q  387 tacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||| ||||||||||    
T  47110556 tacccttaatcatttattattttattttatttt 47110588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 289 - 419
Target Start/End: Original strand, 40348967 - 40349099
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctataa 386  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  40348967 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 40349066  T
Q  387 tacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||||||    
T  40349067 tacccttaatcatttattatttcattttatttt 40349099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 16360442 - 16360511
Alignment:
Q  340 caaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttc 409  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||||||||    
T  16360442 caaataaattttgttatttttgatgaaattctgtgttttttctataatacccttaaccatttattatttc 16360511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 16662146 - 16662231
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    |||||||  ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||| ||| ||||    
T  16662146 caagaaataaaataaattttgttatttttgatgaaaatttgtgttttttttataatacccttaaccatttattattttattatatt 16662231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 17636506 - 17636591
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    |||||||  ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||||| ||| ||||    
T  17636506 caagaaataaaataaattttgttatttttgatgaaaatttgtgttttttttataatacccttaaccatttattattttattatatt 17636591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 412
Target Start/End: Complemental strand, 7743625 - 7743542
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt-tttctataatacccttaatcatttattatttcatt 412  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||| |||||||||||||||    
T  7743625 accaagatatcaaataaattttgttatttttgatgaaattatgtgtttctttctataataccgttaattatttattatttcatt 7743542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 412
Target Start/End: Original strand, 3091565 - 3091649
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcatt 412  Q
    ||||| ||| |||||||||||||||||||||||||||| | | ||||||||  ||||||||||||||| ||||||||||||||||    
T  3091565 accaaaaaatcaaataaattttgttatttttgatgaaattctttgtgttttttctataatacccttaaccatttattatttcatt 3091649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 37983206 - 37983289
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||| ||||||||||||||||||||||||||||   | | |||||| ||||||||| |||| |||||||||||||||| ||||    
T  37983206 caagaaatcaaataaattttgttatttttgatgaaa--ttttatgttttttataatacctttaaccatttattatttcattatatt 37983289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 25060181 - 25060133
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  25060181 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 25060133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 27942256 - 27942177
Alignment:
Q  342 aataaattttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||| |||||||| |||| | ||||||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  27942256 aataaatttttttatttttaatgagattatgtgtgttttttctataatacctttaaccatttattatttcattctatttt 27942177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 2911596 - 2911548
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    ||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  2911596 cctccatttcaaaatacatgtccattttggagaaattgcagtaaccaag 2911548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 3498973 - 3498892
Alignment:
Q  340 caaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttatttt 419  Q
    ||||| ||||||||||||||| ||||||   | ||| | |||||||||||||  |||| |||||||||||||||||||||||    
T  3498973 caaattaattttgttattttttatgaaattttttgtatcttttctataatacttttaaccatttattatttcattttatttt 3498892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 27021566 - 27021624
Alignment:
Q  348 ttttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattat 406  Q
    |||||||| ||||||||||| ||||| | |||||||||||| ||||||| |||||||||    
T  27021566 ttttgttacttttgatgaaactatgtcttttttctataataaccttaattatttattat 27021624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 2910851 - 2910900
Alignment:
Q  275 taaaaatatactcc-tccgtttcaaaatacatgtctattttggagaaatt 323  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  2910851 taaaaatatactccctccgtttcaaaatacatgtctattttaaagaaatt 2910900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Original strand, 28200298 - 28200335
Alignment:
Q  371 tgtgtgttttctataatacccttaatcatttattattt 408  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  28200298 tgtgttttttctataatatccttaatcatttattattt 28200335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 23045551 - 23045411
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  23045551 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 23045452  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  23045451 aatacccttaatcatttattatttcattttatttttttctc 23045411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 289 - 425
Target Start/End: Complemental strand, 47038120 - 47037984
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 388  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47038120 tccgtttcaaaatacatgtccattttggagaaattgtactaactaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgttttctataata 47038021  T
Q  389 cccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||| |||||    
T  47038020 cccttaatcatttattatttcattttatttttttctc 47037984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 287 - 415
Target Start/End: Original strand, 284338 - 284468
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  284338 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctat 284437  T
Q  385 aatacccttaatcatttattatttcatttta 415  Q
    |||||||||||||||||||||||||||||||    
T  284438 aatacccttaatcatttattatttcatttta 284468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 40783929 - 40783789
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  40783929 cctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 40783830  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  40783829 aatacccttaatcatttattatttcattttatttttttctc 40783789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 275 - 419
Target Start/End: Original strand, 321618 - 321765
Alignment:
Q  275 taaaaatatactcc-tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--t 371  Q
    ||||||| |||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  321618 taaaaatttactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt 321717  T
Q  372 gtgtgttttctataatacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  321718 gtgtgttttctataatatccttaatcatttattatttcattttatttt 321765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 24772177 - 24772043
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctat 384  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  24772177 cctccgtttcaaaatacatgtccattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtattttctat 24772078  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||| |||||||||||| ||| ||||||    
T  24772077 aatacccttaaccatttattattttattctatttt 24772043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 27211236 - 27211102
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  27211236 cctccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaccaaataaattttgttatttttgaggaaattatatgtgtgttttctat 27211137  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||| |||||||||||| ||| ||||||    
T  27211136 aatacccttaaccatttattattttattctatttt 27211102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 280 - 419
Target Start/End: Original strand, 23526237 - 23526379
Alignment:
Q  280 atatactcct-ccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtg 376  Q
    |||||||||| || |||||||||||||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||  || ||||||    
T  23526237 atatactccttccatttcaaaatacatgttcattttggagaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtg 23526336  T
Q  377 ttttctataatacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  23526337 ttttctataatacccttaaccatttattatttcattctatttt 23526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 289 - 419
Target Start/End: Original strand, 46771644 - 46771776
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataa 386  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||  || ||||||||||||||||    
T  46771644 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaattaaataaattttgttatttttgatgaaattatgtgtgtgttttctataa 46771743  T
Q  387 tacccttaatcatttattatttcattttatttt 419  Q
    ||||||||| |||||||| ||||||| ||||||    
T  46771744 tacccttaaccatttattttttcattctatttt 46771776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 302 - 419
Target Start/End: Original strand, 33082765 - 33082884
Alignment:
Q  302 acatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctataatacccttaatcat 399  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||| |||    
T  33082765 acatgtctattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccat 33082864  T
Q  400 ttattatttcattttatttt 419  Q
    ||||||||| ||| ||||||    
T  33082865 ttattattttattctatttt 33082884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 297 - 419
Target Start/End: Complemental strand, 52037382 - 52037260
Alignment:
Q  297 aaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaat 396  Q
    |||||||||||| ||||| ||||||||||| || |||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |||||     
T  52037382 aaaatacatgtccattttagagaaattgcattatccaaaaaaccaaataaattttattatttttgataaaattatgtgtgttttctataatactcttaac 52037283  T
Q  397 catttattatttcattttatttt 419  Q
    |||||||||||||||| ||||||    
T  52037282 catttattatttcattctatttt 52037260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 333 - 408
Target Start/End: Complemental strand, 1838053 - 1837978
Alignment:
Q  333 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattattt 408  Q
    |||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||    
T  1838053 aagaaatcaaataaattttgttatttttgatgaaattatgtgttttttctataatacccttacccatttattattt 1837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 1749357 - 1749446
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttatttt 419  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||| | |||| |||||||||||| ||| ||||||    
T  1749357 caagaaatcaaataaattttgttatttttgatgaaattatatgtgtgttttctataatagcattaaccatttattattttattctatttt 1749446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 52478016 - 52478103
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||| ||||||  |||||| |||||||| ||||    
T  52478016 accaagaaatcaaataaattttgttatttttgatgaaattttgtgttttttctataataaccttaaaaatttatcatttcattctatt 52478103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 421
Target Start/End: Original strand, 7765072 - 7765154
Alignment:
Q  341 aaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttattttct 421  Q
    ||||||||||||||||||||| |||||  ||||||||||||||  |||||||| ||| |||||||||||| ||||| ||||||    
T  7765072 aaataaattttgttatttttggtgaaattatatgtgtgttttccgtaatacccataaccatttattatttaatttttttttct 7765154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 34458950 - 34458863
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||| ||||||||||||  ||||||| |||||| | ||||| |||||||||||| ||||| | ||||||||||||||| ||||    
T  34458950 accaagaaatcaaataaatttttctattttttatgaaattctgtgttttttctataataaccttactaatttattatttcattctatt 34458863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 3943065 - 3943113
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  3943065 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 3943113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 9588675 - 9588723
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  9588675 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 9588723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 41959083 - 41959131
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  41959083 cctccgtttcaaaatacatgtccattttggagaaattgcaataaccaag 41959131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 417
Target Start/End: Complemental strand, 51065028 - 51064893
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttct---- 382  Q
    ||||||||||| ||||| |||| |||||  ||||||| |||  |||||| || ||||||||| |||| ||||||||||||| | | |||||||| |        
T  51065028 cctccgtttcacaatacttgtccattttaaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgttttttctat 51064929  T
Q  383 -ataatacccttaatcatttattatttcattttatt 417  Q
     |||||||||||| || |||||||||||||| ||||    
T  51064928 aataatacccttactcgtttattatttcattatatt 51064893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 13985037 - 13984991
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  13985037 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 13984991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 27143239 - 27143151
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaaatatgtg---tgttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||| ||||||||||||||||||||||| |||| |  |||   | ||||||||||||  |||||||||||||||||||||| ||||    
T  27143239 caagaaatcaaataaattttgttatttttgaggaaattccgtgagtttttttctataatattcttaatcatttattatttcattctatt 27143151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 31004012 - 31003926
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||| ||||||||||||   |||||| |||||| ||||||| ||||  ||||||||||||||| |||||||||||| ||| ||||    
T  31004012 accaagaaatcaaataaatttt---atttttaatgaaagtatgtgtattttttctataatacccttaaccatttattatttaattctatt 31003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 40261501 - 40261419
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg---ttttctataatacccttaatcatttattatttc 409  Q
    ||||||||| |||||||||||||||| ||||||||||| |  |||||   |||||||||||| | |||| |||||||||||||    
T  40261501 accaagaaatcaaataaattttgttaattttgatgaaattgcgtgtgtttttttctataatatcattaaccatttattatttc 40261419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 40562797 - 40562733
Alignment:
Q  342 aataaattttgttatttttgatgaaa-atatgtgtgttttctataatacccttaatcatttatta 405  Q
    |||||||||||||||||||||| ||  |||| |||||||||||||||||| |||| |||||||||    
T  40562797 aataaattttgttatttttgataaattatatatgtgttttctataataccattaaccatttatta 40562733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 402
Target Start/End: Original strand, 3657125 - 3657199
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatg--tgtgttttctataatacccttaatcattta 402  Q
    ||||||||| ||||||||||||||||||||| |||||| | ||  ||| |||||||||||| |||||| ||||||    
T  3657125 accaagaaatcaaataaattttgttatttttaatgaaattttgtatgttttttctataataaccttaaccattta 3657199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 417
Target Start/End: Original strand, 18396754 - 18396832
Alignment:
Q  341 aaataaattttgttatttttgatgaaaatatgtgtg--ttttctataatacccttaatcatttattatttcattttatt 417  Q
    |||||||||||||||||||| |||||| ||||||||  ||||||||||||   |||| |||| ||||||||||| ||||    
T  18396754 aaataaattttgttattttttatgaaattatgtgtggtttttctataatatatttaaccattcattatttcattctatt 18396832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 9589667 - 9589631
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaatt 323  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9589667 cctccgtttcaaaatacatgtctattttagagaaatt 9589631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 409
Target Start/End: Original strand, 25929173 - 25929241
Alignment:
Q  341 aaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttc 409  Q
    ||||||||||||||| ||||||| ||| | ||||| |||||||  ||| |||||| |||||||||||||    
T  25929173 aaataaattttgttaattttgattaaattctgtgttttttctacgatatccttaaccatttattatttc 25929241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 40564293 - 40564241
Alignment:
Q  296 caaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaat 348  Q
    ||||||| ||||| |||||||| |||| ||| |||||||||||||||||||||    
T  40564293 caaaatatatgtccattttggaaaaatcgcagtaaccaagaaaccaaataaat 40564241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 44227853 - 44227889
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaatt 323  Q
    |||||||||||||||||||||| ||||||||||||||    
T  44227853 cctccgtttcaaaatacatgtccattttggagaaatt 44227889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 44228276 - 44228228
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    ||||| |||||||||||||||| ||||||||||||||||  ||||||||    
T  44228276 cctccatttcaaaatacatgtccattttggagaaattgctgtaaccaag 44228228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 365
Target Start/End: Complemental strand, 14351989 - 14351954
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatga 365  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14351989 accaagaaaacaaataaattttgttatttttgatga 14351954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 24876633 - 24876699
Alignment:
Q  350 ttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    |||||||||||||||| | ||||||| |||||||||||||| || | ||||||| |||||||| ||||    
T  24876633 ttgttatttttgatgatattatgtgt-ttttctataatacctttgaccatttatcatttcattctatt 24876699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 417
Target Start/End: Complemental strand, 31061662 - 31061594
Alignment:
Q  350 ttgttatttttgatgaaaatatgtgtg--ttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||||| |||||| ||||||||  ||||| ||||||||| ||| |||||||||||||||| ||||    
T  31061662 ttgttattttttatgaaattatgtgtgttttttccataataccc-taaccatttattatttcattatatt 31061594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 1168369 - 1168414
Alignment:
Q  290 ccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||  ||||| |||||||||| ||||||||    
T  1168369 ccgtttcaaaatacatgtcgtttttgaagaaattgcagtaaccaag 1168414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 406
Target Start/End: Complemental strand, 21623756 - 21623680
Alignment:
Q  329 aaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattat 406  Q
    |||||||||| |  ||||||||||||| ||||||||||| | ||| | |||||| ||||||||||||  |||||||||    
T  21623756 aaccaagaaaaccgataaattttgttacttttgatgaaagtgtgtct-ttttctttaatacccttaaatatttattat 21623680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 3943799 - 3943763
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaatt 323  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  3943799 cctccgtttcaaaatacatgtccattttagagaaatt 3943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 41959845 - 41959809
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaatt 323  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  41959845 cctccgtttcaaaatacatgtccattttagagaaatt 41959809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 289 - 425
Target Start/End: Complemental strand, 24706517 - 24706379
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 386  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  24706517 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 24706418  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  24706417 tacccttaatcatttattatttcattttatttttttctc 24706379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 25704656 - 25704790
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  25704656 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 25704755  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||||||||    
T  25704756 aatacccttaatcatttattatttcattttatttt 25704790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 21310430 - 21310564
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  21310430 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 21310529  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||| ||||    
T  21310530 aatacccttaatcatttattatttcattttttttt 21310564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 14261049 - 14261189
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  14261049 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgataaaaatatgtgtgtgttttctat 14261148  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  14261149 aatacccttaataatttattatttcattttatttttttctc 14261189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 289 - 419
Target Start/End: Complemental strand, 22321537 - 22321405
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 386  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  22321537 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctataa 22321438  T
Q  387 tacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||||||    
T  22321437 tacccttaatcatttattatttcattttatttt 22321405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 12071566 - 12071700
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  12071566 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaataaactaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 12071665  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||||||||||||||||||    
T  12071666 aatacccttaatcatttattatttcattttatttt 12071700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 40122757 - 40122617
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  40122757 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 40122658  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  40122657 aatacccttaaccatttattatttcattttatttttttctc 40122617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 34324855 - 34324720
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaa-taaattttgttatttttgatgaaaata--tgtgtgttttcta 383  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  |||||||||||||    
T  34324855 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaattaaattttgttatttttgatgaaaatatgtgtgtgttttcta 34324756  T
Q  384 taatacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||||||||||||||||||||||||||||    
T  34324755 taatacccttaatcatttattatttcattttatttt 34324720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 289 - 425
Target Start/End: Original strand, 44568844 - 44568982
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctataa 386  Q
    |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  44568844 tccgtttcaaaatacatgtccattttgaagaaattgcactaaccaaaaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctataa 44568943  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  44568944 tacccttaatcatttattatttcattttatttttttctc 44568982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 21661807 - 21661667
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  21661807 cctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctat 21661708  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    |||||| |||| ||||||||||||||||||||||| |||||    
T  21661707 aatacctttaaccatttattatttcattttatttttttctc 21661667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 21670571 - 21670431
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  21670571 cctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaatttttttatttttgatgaaaatatgtgtgtgttttctat 21670472  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    |||||| |||| ||||||||||||||||||||||| |||||    
T  21670471 aatacctttaaccatttattatttcattttatttttttctc 21670431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 289 - 425
Target Start/End: Original strand, 50767871 - 50768009
Alignment:
Q  289 tccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataa 386  Q
    ||||||||||||||||| |  ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  50767871 tccgtttcaaaatacatattcattttagagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataa 50767970  T
Q  387 tacccttaatcatttattatttcattttattttcttctc 425  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  50767971 tacccttaataatttattatttcattttatttttttctc 50768009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 288 - 419
Target Start/End: Complemental strand, 20249283 - 20249151
Alignment:
Q  288 ctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt-tttctataa 386  Q
    ||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  20249283 ctccgtttcaaaatacatgtccattttggataaattgtattaaccaagaaaccaaataaattttgttatttttgaagaaattatgtgtgtgtttctataa 20249184  T
Q  387 tacccttaatcatttattatttcattttatttt 419  Q
    ||||||||| |||||||||||| ||| ||||||    
T  20249183 tacccttaaccatttattattttattctatttt 20249151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 31892243 - 31892373
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataa 386  Q
    ||||||| |||||||||||||  |||||  |||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||    
T  31892243 cctccgtatcaaaatacatgttcattttaaagaaattgcagtaaccaagaaatcaaataaattttattatttttgatgaaatta--tgtgttttctataa 31892340  T
Q  387 tacccttaatcatttattatttcattttatttt 419  Q
    |||| || | |||||||||||||||| ||||||    
T  31892341 tacctttgaccatttattatttcattctatttt 31892373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 292 - 395
Target Start/End: Original strand, 1988046 - 1988150
Alignment:
Q  292 gtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatg--tgtgttttctataatac 389  Q
    |||| |||||| |||||||||| |||||||||||| |||| |||||| |||||||||||| ||||||||||||||| ||||  |||||||||||||||||    
T  1988046 gttttaaaatatatgtctattt-ggagaaattgcagtaactaagaaatcaaataaattttattatttttgatgaaattatgtatgtgttttctataatac 1988144  T
Q  390 ccttaa 395  Q
    ||||||    
T  1988145 ccttaa 1988150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 333 - 417
Target Start/End: Original strand, 32543532 - 32543617
Alignment:
Q  333 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttct-ataatacccttaatcatttattatttcattttatt 417  Q
    |||||||||||||| |||||||| ||||||||||| | | |||||||| | |||||||||||||||||||||||||||||||||||    
T  32543532 aagaaaccaaataatttttgttaattttgatgaaattctttgtgtttttttataatacccttaatcatttattatttcattttatt 32543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 20714577 - 20714488
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg---ttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||   |||||||||||| |||||| |||||||||||||||| ||||    
T  20714577 accaataaatcaaataaattttgttatttttgatgaaactatgtgtgtgtttttctataata-ccttaaccatttattatttcattatatt 20714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 409
Target Start/End: Complemental strand, 26676837 - 26676714
Alignment:
Q  288 ctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatat--gtgtgttttctata 385  Q
    |||||||||| ||||| | || |||||| ||||||| |||  |||||| || ||||||||| |||| |||||| |||||| | |  |||| |||||||||    
T  26676837 ctccgtttcacaatacttatccattttgaagaaattacacataccaaggaatcaaataaatgttgtcattttttatgaaattcttcgtgttttttctata 26676738  T
Q  386 atacccttaatcatttattatttc 409  Q
    ||||||||| ||||||||||||||    
T  26676737 atacccttactcatttattatttc 26676714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 6129175 - 6129093
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcatt 412  Q
    ||||||| |||||||||||||||||||||||| |||   | ||| | ||||||| ||||||||||||||||||||||||||||    
T  6129175 caagaaatcaaataaattttgttatttttgataaaattctttgtattttttctacaatacccttaatcatttattatttcatt 6129093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 419
Target Start/End: Original strand, 21064834 - 21064899
Alignment:
Q  354 tatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||| |||||||||||| |||||||| |||||  ||||||||||||||| ||||||    
T  21064834 tatttttgatgaaattatgtgtgttttttataatactcttaactatttattatttcattctatttt 21064899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 19692771 - 19692860
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||| ||||||||| |||| |||||| |||||| | | ||||||||  |||||||| ||||| ||||||||||||||||| ||||    
T  19692771 accaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttattatttcattctatt 19692860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 19703356 - 19703445
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||| ||||||||| |||| |||||| |||||| | | ||||||||  |||||||| ||||| ||||||||||||||||| ||||    
T  19703356 accaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttattatttcattctatt 19703445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 48652268 - 48652356
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgt-gttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||| |||||||||||||||||||||||||||| | | |||  |||||| ||| ||  ||| ||||||||||||||||| ||||    
T  48652268 accaagaaatcaaataaattttgttatttttgatgaaattctttgtatttttctttaacacatttactcatttattatttcattatatt 48652356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 403
Target Start/End: Complemental strand, 34284234 - 34284171
Alignment:
Q  342 aataaattttgttatttttgatgaaaatatgtgtgtttt--ctataatacccttaatcatttat 403  Q
    |||||||||||||| ||||||||||| ||| ||| ||||  |||||||||||||||| ||||||    
T  34284234 aataaattttgttacttttgatgaaactatttgtattttttctataatacccttaattatttat 34284171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 19361662 - 19361700
Alignment:
Q  297 aaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  19361662 aaaatacatgtccattttggagaaattgcagtaaccaag 19361700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 51777687 - 51777755
Alignment:
Q  348 ttttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    |||| ||| ||||||| ||| | ||||| ||||||||||||| ||||| ||||||||||||||| |||||    
T  51777687 tttttttaattttgataaaattctgtgt-ttttctataatactcttaaccatttattatttcatgttatt 51777755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 23366794 - 23366934
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  23366794 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctat 23366893  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  23366894 aatacccttaatcatttattatttcattttatttttttctc 23366934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 39938175 - 39938315
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  39938175 cctccgtttcaaaatacatgaccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 39938274  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  39938275 aatacccttaatcatttattatttcattttatttttttctc 39938315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 3518913 - 3519047
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  3518913 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 3519012  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||| ||||||||||||||||||||||    
T  3519013 aatacccttaataatttattatttcattttatttt 3519047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 1102508 - 1102648
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttctat 384  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  1102508 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 1102607  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  1102608 aatacccttaaccatttattatttcattttatttttttctc 1102648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 310 - 425
Target Start/End: Original strand, 1646317 - 1646432
Alignment:
Q  310 attttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttc 409  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1646317 attttggagaaattgcagcaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttc 1646416  T
Q  410 attttattttcttctc 425  Q
    |||||||||| |||||    
T  1646417 attttatttttttctc 1646432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 12970011 - 12969877
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtg--tgttttctat 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  | ||||||||    
T  12970011 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtatattttctat 12969912  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||| |||||||||||| ||| ||||||    
T  12969911 aatacccttaaccatttattattttattctatttt 12969877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 37674009 - 37673887
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctat 384  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  37674009 cctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 37673910  T
Q  385 aatacccttaatcatttattatt 407  Q
    |||||||||||||||||||||||    
T  37673909 aatacccttaatcatttattatt 37673887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 22388335 - 22388273
Alignment:
Q  359 ttgatgaaaatatgtgtgt--tttctataatacccttaatcatttattatttcattttatttt 419  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  22388335 ttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatttt 22388273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 34224426 - 34224378
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  34224426 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 34224378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 407
Target Start/End: Complemental strand, 39562104 - 39562037
Alignment:
Q  340 caaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatt 407  Q
    ||||||||||||||||||||||| |||| ||| | |||||| | |||||||||||| |||||||||||    
T  39562104 caaataaattttgttatttttgaagaaattatttttgttttttctaatacccttaaccatttattatt 39562037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 417
Target Start/End: Original strand, 14779838 - 14779914
Alignment:
Q  341 aaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||||| |||||||||||||||  || ||||| ||||||||||||  |||| ||||||||||||||||| ||||    
T  14779838 aaataaatttttttatttttgatgaaattatttgtgttttttctataata--cttactcatttattatttcattatatt 14779914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 19976380 - 19976468
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtg-tgttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||||| ||||||||||||| || ||||||| ||| |||||| | ||||||||||||||||||   ||||||||||| ||| ||||    
T  19976380 accaagaaatcaaataaattttggtacttttgataaaattatgtgtttttttctataatacccttacctatttattattttattatatt 19976468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 35179164 - 35179097
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctataatacccttaa 395  Q
    |||||||||  ||||||||||||||||||||||||||| | ||||||  |||||||||||| ||||||    
T  35179164 accaagaaatgaaataaattttgttatttttgatgaaattttgtgtgttttttctataataaccttaa 35179097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 34242040 - 34242107
Alignment:
Q  345 aaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcatt 412  Q
    ||||||||||||||||||||||| | ||||| |||| | ||| |||||||  ||||||||||||||||    
T  34242040 aaattttgttatttttgatgaaattctgtgttttttttgtaacacccttacccatttattatttcatt 34242107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 18078104 - 18078193
Alignment:
Q  330 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||| ||| |||||||||||||||||||||||||||  | | ||||  ||||||||||||| ||| | ||||||||| |||||| ||||    
T  18078104 accaaaaaatcaaataaattttgttatttttgatgaatttttttgtggattttctataatactcttgaccatttattaattcattctatt 18078193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 4917839 - 4917915
Alignment:
Q  357 ttttgatgaaaatatgtgtgttttctataatacccttaatcatttattatttcattttattttcttctcactcgacca 434  Q
    ||||||| ||| ||||||| ||||||||||||  |||||| ||||||||||||||| |||| | ||||||||| ||||    
T  4917839 ttttgataaaattatgtgttttttctataataatcttaattatttattatttcattctattat-ttctcactctacca 4917915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 32840401 - 32840312
Alignment:
Q  333 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt-----tttctataatacccttaatcatttattatttcattttatt 417  Q
    |||||| |||||||||||||||||||||||||||| | ||||| |     ||||||||||||| |||   ||||||||||||||| ||||    
T  32840401 aagaaatcaaataaattttgttatttttgatgaaattctgtgtttttttctttctataataccattatcgatttattatttcattctatt 32840312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 1002997 - 1002870
Alignment:
Q  292 gtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaat--atgtgtgttttctataatac 389  Q
    |||||||||||||||||  |||||  || ||| |||  || |||||| |||||||||||| ||||||||||||||| |   | ||| ||||| | ||||     
T  1002997 gtttcaaaatacatgtcgcttttgaggatattacacatactaagaaatcaaataaattttattatttttgatgaaattccttttgttttttcgacaataa 1002898  T
Q  390 ccttaatcatttattatttcattttatt 417  Q
    | ||| ||||||||||||||||| ||||    
T  1002897 cattactcatttattatttcattctatt 1002870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 14117814 - 14117753
Alignment:
Q  345 aaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaatcatttattat 406  Q
    ||||||||||| ||||||||||| ||||| | ||| ||||||||| |||||  |||||||||    
T  14117814 aaattttgttacttttgatgaaattatgtctttttcctataatactcttaagtatttattat 14117753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 287 - 419
Target Start/End: Original strand, 45459 - 45593
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctat 384  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  45459 cctccgtttcaaaatacatgttcattttggagaaattgcaccaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtattttctat 45558  T
Q  385 aatacccttaatcatttattatttcattttatttt 419  Q
    ||||||||||| |||||||||||| ||| ||||||    
T  45559 aatacccttaaccatttattattttattctatttt 45593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 297 - 419
Target Start/End: Complemental strand, 525 - 403
Alignment:
Q  297 aaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgttttctataatacccttaat 396  Q
    |||||||||||  ||||||| ||||||||| ||| ||| ||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||    
T  525 aaaatacatgttcattttggcgaaattgcagtaatcaaaaaatcaaataaattttgttatttttgataaaattatgtgtgttttttataatacccttaat 426  T
Q  397 catttattatttcattttatttt 419  Q
    |||||||||||||||| ||||||    
T  425 catttattatttcattctatttt 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 175 - 307
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtg--tgttttctat 384  Q
    ||||||||||||||||||| || | ||||||||||||||| |||||||        |||||||||||||||||| |||||||||||||  ||||||||||    
T  175 cctccgtttcaaaatacatatccactttggagaaattgcagtaaccaa--------ataaattttgttattttttatgaaaatatgtgtgtgttttctat 266  T
Q  385 aatacccttaatcatttattatttcattttattttcttctc 425  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  267 aatacccttaaccatttattatttcattttatttttttctc 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 70874 - 70961
Alignment:
Q  332 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtg--ttttctataatacccttaatcatttattatttcattttatt 417  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||  |||||| ||| |||||||| |||||||||||||||| ||||    
T  70874 caagaaatcaaataaattttgttatttttgatgaaattctgtgtgttttttctgtaacacccttaaccatttattatttcattctatt 70961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 23472 - 23520
Alignment:
Q  287 cctccgtttcaaaatacatgtctattttggagaaattgcactaaccaag 335  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  23472 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 23520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 65375 - 65301
Alignment:
Q  348 ttttgttatttttgatgaaaatatgtgtgtttt---ctataatacccttaatcatttattatttcattttatttt 419  Q
    |||| ||||||||||||||| ||| ||||||||   ||||||||||||||| |||||||||||||||| ||||||    
T  65375 ttttattatttttgatgaaattatatgtgtttttttctataatacccttaaccatttattatttcattctatttt 65301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University