View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7693_low_15 (Length: 259)
Name: NF7693_low_15
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7693_low_15 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0257 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 17489 - 17734
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17489 |
tttccaatctccatatgtaaagagcttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
17588 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17589 |
acaaaatggagattccaaatctaaaatttgtagtatttgaaaatctaccaagactcagtcatgcccagggaattcaatttcaagctgtaaaataccgttt |
17688 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagcatcaacacca |
246 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17689 |
catacagaattgtcaaaaactatctctggcttcagcatcaacacca |
17734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28183927 - 28184154
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
28183927 |
tttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaagcagatgagctggaggaaatatttgtaagtgaaggtgatgatc |
28184026 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| | ||||| |
|
|
| T |
28184027 |
acaaagtggagattccaaatctagaatgtgtagtatttgaaaatctaccaagcctcagtcatgcccagagaattcaatttcaagctgtaaaaaatcgttt |
28184126 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctg |
228 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
28184127 |
catacggaattgtcaaaaactctctctg |
28184154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 28053676 - 28053878
Alignment:
| Q |
42 |
tctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatcacaaagtggagattccaaatctaaaatttgtagtatttgaa |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28053676 |
tctagtgataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaa |
28053775 |
T |
|
| Q |
142 |
aatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcatacggaattgtcaaaaactatctctgccttcagcatcaa |
241 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
28053776 |
aatctaccaagcctcagtcatgaccagggaattcaatttcaagctgtaaaacatcgtttcatactgaattgtcaaaaactatctctgacttcagcatcaa |
28053875 |
T |
|
| Q |
242 |
cac |
244 |
Q |
| |
|
||| |
|
|
| T |
28053876 |
cac |
28053878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 28064101 - 28064303
Alignment:
| Q |
42 |
tctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatcacaaagtggagattccaaatctaaaatttgtagtatttgaa |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28064101 |
tctagtgataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaa |
28064200 |
T |
|
| Q |
142 |
aatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcatacggaattgtcaaaaactatctctgccttcagcatcaa |
241 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
28064201 |
aatctaccaagcctcagtcatgaccagggaattcaatttcaagctgtaaaacatcgtttcatactgaattgtcaaaaactatctctgacttcagcatcaa |
28064300 |
T |
|
| Q |
242 |
cac |
244 |
Q |
| |
|
||| |
|
|
| T |
28064301 |
cac |
28064303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 27918532 - 27918774
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||| |
|
|
| T |
27918532 |
tttccaatctccatatgtaaagaccttcctgagctaaagtgtctagtgataagagaagcagatgagctggatgaaatatttgcaaatgaaggtgatgatc |
27918631 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
| ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||| || ||||||||| |||||| |||||||| | ||||| |
|
|
| T |
27918632 |
agaaagtggagattccaaatctagaatatctagtatttgaaaatctaccaagcctcagtgatgtccagggaattcattttcaaactgtaaaacatcgttt |
27918731 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagcatcaaca |
243 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
27918732 |
catacagaattgtcaaacactatctctggcttcatcatcaaca |
27918774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28159363 - 28159590
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
28159363 |
tttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaatcagatgagctagaggaaatatttgtaattgaaggtgatgatc |
28159462 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| | ||||| |
|
|
| T |
28159463 |
agaaagtgaagattccaaatctagaatgtgtagtatttgaaaatctaccaatcctcagtcatgcccagagaattcaatttcaagctgtaaaaaatcgttt |
28159562 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctg |
228 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
28159563 |
catacggaattgtcaaaaactctctctg |
28159590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 28002338 - 28002580
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||| |||||||||||| || ||||||||||||||||| |
|
|
| T |
28002338 |
tttccaatctccatatgtaaagagcttcctgagctaaatgttctgaccataagagaagcagacgaggtagaggaaatatttggaagtgaaggtgatgatc |
28002437 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||| ||||||||||| | ||| | |
|
|
| T |
28002438 |
acaaagtcgagattccaaatctaaaatttgtagtatttgaaaatctacgaagcctctgtcatgatcagggaattcaatttgaagctgtaaaacatcgtct |
28002537 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagcatcaaca |
243 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28002538 |
catactgaattgtcaaaaactatctctgacttcagcatcaaca |
28002580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 28147894 - 28148139
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| ||| | |||||||||||||||||| |||||||||||| || ||||||| |||||||| |
|
|
| T |
28147894 |
tttccaatctccatatctaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaatttgatgatc |
28147993 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||| | ||||| |
|
|
| T |
28147994 |
acaaagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaagcctctatcatgctcagggaattcaatttcaagttgtaaaacatcgttt |
28148093 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagcatcaacacca |
246 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
28148094 |
catactgaattgtcaaaaactatctctggcttcagagtcaacacca |
28148139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28132110 - 28132346
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| | | ||| | |||||||||||||| ||| |||||||||||| || ||||||||||||||||| |
|
|
| T |
28132110 |
tttccaatctccgtatgtaaagagcttcctgagctatattatctgatcataagagaagcagacgagttagaggaaatatttgtaagtgaaggtgatgatc |
28132209 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| | ||||| |
|
|
| T |
28132210 |
acaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaagcctcaatcatgcccagggaattcaatttcaagatgtaaaacatcgttt |
28132309 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagca |
237 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
28132310 |
catacagaattgtcaaaaactctctctgacttcagca |
28132346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28081903 - 28082139
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||||||| | ||| | |||||||||||||||||| |||||||||||| || ||| ||||||||||||| |
|
|
| T |
28081903 |
tttccaatctccgtatataaagagcttcctgagctaaattatctgatcataagagaagcagatgagttagaggaaatatttgtaagcgaaggtgatgatc |
28082002 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||||| ||| ||||| |
|
|
| T |
28082003 |
acaaagtggagattccatatctacgatttgtagtatttgaaaatcttccaagcctctgtcatgcccaaggaattcaatttgaagctgtaacatatcgttt |
28082102 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagca |
237 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
28082103 |
catacagaattgtcaaaaactctctctggcttcagca |
28082139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 28481594 - 28481358
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||| ||| | |||||||||||||| ||| | |||||||||| || ||||||||||||||||| |
|
|
| T |
28481594 |
tttccaatctccatatctaaagagcttccaaagctaaatgttctcatcataagagaagcagacgagttcgaggaaatatttggaagtgaaggtgatgatc |
28481495 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| | ||||| |
|
|
| T |
28481494 |
acaaagtcgagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctctgtcatgatcagggaattcaatttcaagctgtaaaacatcgttt |
28481395 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagca |
237 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
28481394 |
catactgaattgtcaaaaactctctctggcttcagca |
28481358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 28510766 - 28510530
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||| ||| | |||||||||||||||||| |||||||||||| || ||||||||||||||||| |
|
|
| T |
28510766 |
tttccaatctccatatctaaagagcttccagagctaattgttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaaggtgatgatc |
28510667 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| | ||||| |
|
|
| T |
28510666 |
acaaagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaagcctctatcatgctcagggaattcaatttcaagctgtaaaacatcgttt |
28510567 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagca |
237 |
Q |
| |
|
||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
28510566 |
aataatgaattgtcaaaaactctctctggcttcagca |
28510530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 28035588 - 28035837
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| || || | |||| ||||||||||||||||| || | || ||||||| |||||||||||||||||||| |
|
|
| T |
28035588 |
tttccaatctccatatgtaaagagcttcccaagttagaagctctaatgataagagaagcagataagatggaagaaatatttgcaagtgaaggtgatgatc |
28035687 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || | ||||||| |||||| |||||||| | ||||| |
|
|
| T |
28035688 |
agaaagtggagattccaaatctaaaatttgtagtgtttgaaaatctaccaagactcagtcatgtccagagaattcattttcaaactgtaaaacaacgttt |
28035787 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagcatcaacaccaaact |
250 |
Q |
| |
|
||| | ||||||||||| |||||||||| ||||| |||||||| |||||| |
|
|
| T |
28035788 |
catgcagaattgtcaaacactatctctggcttcatcatcaacaacaaact |
28035837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 27975512 - 27975754
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| || ||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
27975512 |
tttccaatctccatatgtaaagagcttcttgagctagaggttctcttgataagagaagcagctgagctagaggaaatatttgtaagtgaaggtgatgatc |
27975611 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
|||||||||||||||||||||| | | ||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| | | | |
|
|
| T |
27975612 |
acaaagtggagattccaaatctgatagttgtaatatttgaaaatctaccaagcctccatcatgaccaaggaattcaatttcaagctgtaaaacatcatgc |
27975711 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagcatcaaca |
243 |
Q |
| |
|
||||| ||||||||||||||| || ||| | | |||||||||| |
|
|
| T |
27975712 |
catacagaattgtcaaaaactctccctggcgttagcatcaaca |
27975754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 17746264 - 17746025
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||| |||||||||||||||||| || |||||||||||||| |
|
|
| T |
17746264 |
tttccaatctccatatgtaaagagcttcctgagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtgatg--- |
17746168 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
| ||||| | ||||| || || ||| |||| | ||||| || ||||||||||| |||| || | |||||||||||||||||||||||| | ||||| |
|
|
| T |
17746167 |
agaaagtcaatattccgaaactgaaagttgtggcatttgtcaacctaccaagcctttgtcaagctcaaggaattcaatttcaagctgtaaaacatcgttt |
17746068 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagcatcaaca |
243 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
17746067 |
catacggaattgtcaaaaactctctctggcttcagcaacaaca |
17746025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 19047584 - 19047345
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||| |||||||||||||||||| || |||||||||||||| |
|
|
| T |
19047584 |
tttccaatctccatatgtaaagagcttcctgagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtgatg--- |
19047488 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
| ||||| | ||||| || || ||| |||| | ||||| || ||||||||||| |||| || | |||||||||||||||||||||||| | ||||| |
|
|
| T |
19047487 |
agaaagtcaatattccgaaactgaaagttgtggcatttgtcaacctaccaagcctttgtcaagctcaaggaattcaatttcaagctgtaaaacatcgttt |
19047388 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagcatcaaca |
243 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
19047387 |
catacggaattgtcaaaaactctctctggcttcagcaacaaca |
19047345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27461137 - 27460919
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| || |||| | |||||||||||||| |||||||||||||| || ||||||| ||||||| |
|
|
| T |
27461137 |
tttccaatgtccatatgtaaagagcttcctgagctagaggttctaatcataagagaagcaga---gctagaggaaatatttgtaagtgaaaaagatgatc |
27461041 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
| ||| |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| || |||||||||| | |||||||||||| | | ||| |
|
|
| T |
27461040 |
agaaactggagattccaaatctaaaacttgtagtatttgtaaatctaccaagcctctgtcatgtccagggaattcaactccaagctgtaaaacatcattt |
27460941 |
T |
|
| Q |
201 |
catacggaattgtcaaaaacta |
222 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
27460940 |
ggtacagaattgtcaaaaacta |
27460919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 11418891 - 11419133
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||||| | ||| |||||||||| |||||||||||||||||||||| || |||||||| |||| ||| |
|
|
| T |
11418891 |
tttccaatctccctgtgtaaagagcttcctgagctatatgttctgatgataagagacgcagatgagctagaggaaatatttgtaagtgaagatgatcatc |
11418990 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgttt |
200 |
Q |
| |
|
| ||| |||||||| ||||| |||||| |||||||||||||||| ||||| || | || ||| | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
11418991 |
agaaaagcgagattccgaatcttaaatttttagtatttgaaaatctgccaagtttctgggatacccagagaattcaatatcaagctgtaaaatatcgttt |
11419090 |
T |
|
| Q |
201 |
catacggaattgtcaaaaactatctctgccttcagcatcaaca |
243 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||| || ||||| |
|
|
| T |
11419091 |
catacagaattgtcaaaaactctctctggcttcatcaacaaca |
11419133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27392327 - 27392146
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||| || | | |||| ||||| |
|
|
| T |
27392327 |
tttccaatctccatatgtaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagctagaggaaatatttgtatgcgaagttgatg--- |
27392231 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagc |
185 |
Q |
| |
|
| ||||| | ||||||||||| |||||||||| ||||| || |||||||||||||| || ||| |||||||| |||||||| |
|
|
| T |
27392230 |
agaaagtcaatattccaaatctgaaatttgtagcatttgtcaacctaccaagcctcagccagacccaaggaattcattttcaagc |
27392146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 12146184 - 12146335
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| |||| | |||||||||||| |||||||||||||||||| || | |||||| | |||| |
|
|
| T |
12146184 |
tttccaatctccatatgtaaagagcttcctgagctacagtttctaattataagagaagcaaatgagctagaggaaatatttgtatgtgaagaaggtgatg |
12146283 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaag |
152 |
Q |
| |
|
| ||||| | |||||||| || ||||||||| ||||| || |||||||| |
|
|
| T |
12146284 |
agaaagtcaatattccaaaactggaatttgtagcatttgtcaacctaccaag |
12146335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 27376367 - 27376518
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| || |||||||||||| |||| ||||| ||||||||||||||| || | |||||| | |||| |
|
|
| T |
27376367 |
tttccaatctccatatgtgaagagcttcctgagctagagagtctagtgataaaagaatcagataagctagaggaaatatttgtatgtgaagaaggtgatg |
27376466 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaag |
152 |
Q |
| |
|
| ||||| | || |||||||||||| |||||| ||||| || |||||||| |
|
|
| T |
27376467 |
agaaagtcaatatgccaaatctaaaacttgtagcatttgtcaacctaccaag |
27376518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26142389 - 26142311
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatat |
79 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||| | | |||||||||||||| |||||||||||||||||| |
|
|
| T |
26142389 |
tttccaatctccatttgtaaagagtttcctaagctaaaggctgtgttgataagagaagcaaatgagctagaggaaatat |
26142311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26180694 - 26180616
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatat |
79 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| | | |||||||||||||| |||||||||||||||||| |
|
|
| T |
26180694 |
tttccagtctccatttgtaaagagtttcctgagctaaaggttatgttgataagagaagcaaatgagctagaggaaatat |
26180616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26237429 - 26237351
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatat |
79 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| | | | |||||||||||| ||||| |||||||||||| |
|
|
| T |
26237429 |
tttccagtctccatttgtaaagagtttcctgagctaaaggttatgttcataagagaagcaaatgagttagaggaaatat |
26237351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27347574 - 27347671
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatga |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || |||| | ||||||||| |||| || | |||||||||| || | || |||||||||| |
|
|
| T |
27347574 |
tttccaatctccatatgtaaagagcttcctgagctagaggctctaatcataagagaatcagaagaattggaggaaatatttgtatgtaaaggtgatga |
27347671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 18026561 - 18026466
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgat |
96 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| | || | ||| ||||||||| ||||||||||||||| || | |||||| |||| |
|
|
| T |
18026561 |
tttccaatctccatatataaagagcttcctgagctaaaggttataatcatagtagaagcagagaagctagaggaaatatttgtatgtgaagttgat |
18026466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26131657 - 26131579
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatat |
79 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||||| | | ||||||| |||||| |||||||||||| ||||| |
|
|
| T |
26131657 |
tttccagtctccatttgtaaagagtttcctaagctaaaggttatgatgataagtgaagcaaatgagctagagggaatat |
26131579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26210185 - 26210107
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatat |
79 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||| | | | |||||||||||| ||||| |||||||||||| |
|
|
| T |
26210185 |
tttccagtctccatttgtaaagagtttcctgagctaaatgttatgataataagagaagcaaatgagttagaggaaatat |
26210107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 26627671 - 26627896
Alignment:
| Q |
20 |
aagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgat---cacaaagtggagattcc |
116 |
Q |
| |
|
||||| ||||||||||| || ||| ||||||||||||| | ||| ||||||||||||| || ||||| ||||||| || ||||| |||||||| |
|
|
| T |
26627671 |
aagagcttcctgagctagaggttctgatgataagagaagctggtgaactagaggaaatattcaaaaatgaagatgatgatgatcagaaagtcgagattcc |
26627770 |
T |
|
| Q |
117 |
aaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcatacggaattgtcaa |
216 |
Q |
| |
|
||||||||| | |||| ||||| | |||| ||||||| | || | | |||||||||||||| | |||| || | ||||| ||| |||||||||| |
|
|
| T |
26627771 |
aaatctaaatgtggtagcatttgtcgacctac-aagcctctgccagacacaaggaattcaatttcaggatgtagaaaatcgttttgtacagaattgtcaa |
26627869 |
T |
|
| Q |
217 |
aaactatctctgccttcagcatcaaca |
243 |
Q |
| |
|
||||| ||||| |||||||||||||| |
|
|
| T |
26627870 |
aaactctctctaacttcagcatcaaca |
26627896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26115077 - 26114999
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatat |
79 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||||||||| | | | |||||||||||| ||||| |||| ||||||| |
|
|
| T |
26115077 |
tttccagtctccatttgtaaagagcttcctgagctaaaggttatgataataagagaagcaaatgagttagaagaaatat |
26114999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 8019921 - 8020071
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | ||| | |||||||||||| |||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
8019921 |
tttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatc |
8020020 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaa |
151 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
8020021 |
acaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa |
8020071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 22391289 - 22391444
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||| || ||||||||||||||| || | |||||| | ||||| |
|
|
| T |
22391289 |
tttccaatctccatatgtaaagagcttcctgagctagaggctctagtgataagtgaagcatataagctagaggaaatatttgtatgtgaagaaggtgatc |
22391388 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctc |
156 |
Q |
| |
|
| ||||| | || |||||||||||| ||||| ||||| || |||||||||||| |
|
|
| T |
22391389 |
agaaagtcaatatgccaaatctaaaagttgtatcatttgtcaacctaccaagcctc |
22391444 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 8693427 - 8693252
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||||||| ||| | |||||||||||||||||||| || ||||||| ||||||||||||| |||| |
|
|
| T |
8693427 |
tttccagtctccatatgtaacgagcttcctgagctaaatgttctgatcataagagaagcagatgagctggatgaaatatttgcaagtgaaggtcgtgatg |
8693328 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattca |
176 |
Q |
| |
|
| ||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
8693327 |
agaaagtcgagattccaaatctagaatatgtagtatttgaaaatcttccaagcctctgtcatgcccaaggaattca |
8693252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 54818 - 54681
Alignment:
| Q |
1 |
tttccaatctccatatgtaaagagtttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | |||| | |||||||||||| |||||||||||||||||| || | |||||| | ||||| |
|
|
| T |
54818 |
tttccaatctccatatgtaaagagcttcctgagctagatgctctaatcataagagaagcacatgagctagaggaaatatttgtatgtgaagaaggtgatc |
54719 |
T |
|
| Q |
101 |
acaaagtggagattccaaatctaaaatttgtagtattt |
138 |
Q |
| |
|
| ||||| | |||||||||| ||| |||||| |||| |
|
|
| T |
54718 |
agaaagtcaatcttccaaatctgaaagttgtagcattt |
54681 |
T |
|
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