View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7693_low_4 (Length: 416)
Name: NF7693_low_4
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7693_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 41098160 - 41097775
Alignment:
| Q |
12 |
tgttatctaaaattgaaacacaatgagctaactgcagacatatatttgccttctccaacgtcatccatgcccatcaacacctctgcttcttcgttacggt |
111 |
Q |
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| T |
41098160 |
tgttatctaaaattgaaacacaatgagctaactgcagacatatatttgccttctccaacgtcatccatgcccatcaacccctctgcttcttcgttacggt |
41098061 |
T |
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| Q |
112 |
aacacatcaatcatcaactaaataatatagacgctaaaatctaagacacaggcacccgctctctaaccaaggatgacactaaaatgaggtgttctaccca |
211 |
Q |
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| T |
41098060 |
aacacatcaatcatcaactaaataatatagacgctaaaatctaagacgcaggcactcgccctctaaccaaggatgacattaaaatgaggtgctctaccca |
41097961 |
T |
|
| Q |
212 |
tctccaatctttcaaaccaccttctccttaaaccaactcacctccccacctactacacccttgctaatagaccataactcatttcaccacagtgacgcct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41097960 |
tctccaatctttcaaaccaccttctccttaaaccaactcacctccccacctactacacccttgctaatagaccataactcatttcaccacagtgacgcct |
41097861 |
T |
|
| Q |
312 |
gtaacccaccactcttggtatgaccctcttcaacttcatatttaactgttaaaactttaaaccatacccttcttccctgatcaacatac |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
41097860 |
gtaacccaccactcctggtatgaccctcttcaacttcatatttaactgttaaaactttaaaccataaccttct---ctgatcaacatac |
41097775 |
T |
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