View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7693_low_5 (Length: 381)
Name: NF7693_low_5
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7693_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 45 - 373
Target Start/End: Complemental strand, 47371243 - 47370915
Alignment:
| Q |
45 |
ctccccataaccacagaacattattagcnnnnnnnnnnnncataataattttgtccagaactcaaacaaccatttaagattacccaagtatagaacaaaa |
144 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47371243 |
ctccccataaccacagaacattattagctttttcttttttcataataattttgtccagaactcaaacaaccatttaagattacccaagtatagaacaaaa |
47371144 |
T |
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| Q |
145 |
cctcatcccacataactttttattaacctactaagctctaaactcttcctttcaacttcctccttgctaatattcttataacggaaacaagacaaacact |
244 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47371143 |
cctcatcccacatagttttttattaacctactaagctctaaaatcttcctttcaacttcctccttgctaatattcttataacggaaacaagacaaacact |
47371044 |
T |
|
| Q |
245 |
aaaaaattgcatgtaccttaactctccataaacaacattgccccttctccaacctttgcatcattccgccgccgctactacttcctcaacatttgcaaga |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47371043 |
caaaaattgcatgtaccttaactctccataaacaacattgccccttctccaacctttgcatcattccgccgccgctactacttcctcaacatttgcaaga |
47370944 |
T |
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| Q |
345 |
ctctcgccaaaaataatgtgtttcttctc |
373 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47370943 |
ctctcgccaaaaataatgtgtttcttctc |
47370915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 7173603 - 7173533
Alignment:
| Q |
152 |
ccacataactttttattaacctactaagctctaaactcttcctttcaacttcctccttgctaatattctta |
222 |
Q |
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|||||||| || |||||| ||| || || |||| | |||||||||||||||||| |||||||||||||||| |
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| T |
7173603 |
ccacataaattcttattagcctcctcagatctacaatcttcctttcaacttccttcttgctaatattctta |
7173533 |
T |
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