View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7693_low_6 (Length: 381)
Name: NF7693_low_6
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7693_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 39895758 - 39895407
Alignment:
| Q |
14 |
taattctgaggtgtgtagaattttattttgacatatttatatgtgnnnnnnnnnnnnnggttacgtgtttatatgtgttgagtaaaattgattttgcctc |
113 |
Q |
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| T |
39895758 |
taattctgaggtgtgtagaattttattttgacatatttatatgtgtttttttttttttg-ttacgtgtttatatgtgttgagtaaaattgattttgcctc |
39895660 |
T |
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| Q |
114 |
aaaaattcattctaatttaaaacaaggatttatggtatttgactccaaatatgatttttatacaaatatttattgttctacctacttttacctaaatgaa |
213 |
Q |
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| T |
39895659 |
aaaaattcattctaatttaaaacaaggatttatggtatttgactccaaatatgatttttatacaaatatttattgttctacctacttttacctaaatgaa |
39895560 |
T |
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| Q |
214 |
ccaaaatataaacaatttcacattcaactcatttgaactaaaatcatttttccggagcttgagtggtaaatcatgtcagttgcatatactgtacaaaacg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
39895559 |
ccaaaatataaacaatttcacattcaactcatttgaactaaaatcatttttccggagcttgagtggtaaatcatgtcagttgcatatactgcataaaacg |
39895460 |
T |
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| Q |
314 |
tacaatgtttgaattgatactcaaaatgttgttggactgctgctgatgatact |
366 |
Q |
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| T |
39895459 |
tacaatgtttgaattgatactcaaaatgttgttggactgctgctgatgatact |
39895407 |
T |
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