View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7693_low_8 (Length: 344)
Name: NF7693_low_8
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7693_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 37478957 - 37478642
Alignment:
| Q |
18 |
atcactcacagtgtgtaacagcaccaaatgcgactacccgacgctgaaaccaaaggcaaatagtgtaattgtaaatgcacttttttctaaaacaaatgta |
117 |
Q |
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| T |
37478957 |
atcactcacagtgtgtaacagcaccaaatgcgactacccgacgctgaaaccaaaggcaaatagtgtaattgtaaatgtacttttttctaaaacaaatgta |
37478858 |
T |
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| Q |
118 |
gccatagggttgggcataaaagaaaatggaaattacatgaggatgttgctaaaatggactcatcttgtatcaaaatattatatttaaatagatagtcttc |
217 |
Q |
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| T |
37478857 |
gccatagggttgggcataaaagaaaatggaaattacatgaggatgttgctaaaatggactcatcttgtatcaaaatattatatttaaatagatagtcttc |
37478758 |
T |
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| Q |
218 |
atgacttcatctagcaccattacatttttattgctccaatttccataactatgaggattgcataattaaaaataagaggattatttatcaaagttgaatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37478757 |
atgacttcatctagcaccattacatttttattgctccaatttccataactatgaggattgcataattaaaaataagaggattatttatcaaagttgaatg |
37478658 |
T |
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| Q |
318 |
gtgaccatgtttgatg |
333 |
Q |
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|||||||||||||||| |
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| T |
37478657 |
gtgaccatgtttgatg |
37478642 |
T |
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