View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7693_low_9 (Length: 325)
Name: NF7693_low_9
Description: NF7693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7693_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 44300498 - 44300190
Alignment:
| Q |
1 |
atctattaagcataaaaatcattaatcgatttaagagattgattgaattcgaacctcgtttacattcgcggtcgcggtttctggcggagttttgaggaac |
100 |
Q |
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| T |
44300498 |
atctattaagcataaaaatcattaatcgatttaagagattgattgaattcgaacctcgtttacgttcgcggtcgcggtttctggcggagttttgaggaac |
44300399 |
T |
|
| Q |
101 |
ggcgtcatcggcggaggcgtaaccggcggtgataacgtctttgttgatattatcatctttgatgatgatgttgtcttgaggttgttgttcgtattgtgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44300398 |
ggcgtcatcggcggaggcgtaaccggcggtgataacgtctttgttgatattatcatccttgatgatgatgttgtcttgaggttgttgttcgtattgtgag |
44300299 |
T |
|
| Q |
201 |
agattgttcatactgacactctttctcatagaatcaacgacgactctaactccgaagagcatgaattcggcggagtctgcggtggttgaagcagaagaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44300298 |
agattgttcatactgacactctttctcatagaatcaacgacgactctaactccgaagagcatgaattcggcggagtctgcggtggttgaagcagaagaca |
44300199 |
T |
|
| Q |
301 |
tcgttgaat |
309 |
Q |
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||||||||| |
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| T |
44300198 |
tcgttgaat |
44300190 |
T |
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