View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7694_high_1 (Length: 761)
Name: NF7694_high_1
Description: NF7694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7694_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 288 - 745
Target Start/End: Original strand, 24848707 - 24849164
Alignment:
| Q |
288 |
cagtaccttggagttgaaagcactcagcttcagttcgatccaaaaacccaacaagataattaggatcaacaatatccctaagaacataactcttcttatt |
387 |
Q |
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| T |
24848707 |
cagtaccttggagttgaaagcactcagcttcagttcgatccaaaaacccaacaagataattaggatcaacgatatctctaagaacataactcttcttatt |
24848806 |
T |
|
| Q |
388 |
ttcattaggaacaatacaaccttgcaattcagcaaactcatcaactccacgtctaactctaacaagtatagaagtatctttcttcttataagcttcttga |
487 |
Q |
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| T |
24848807 |
ttcattaggaacaatacaaccttgcaattcagcaaactcatcaactcctctacgtactcttacaagtatagaagtatctttcttcttataagcttcttga |
24848906 |
T |
|
| Q |
488 |
agaatcttatttacaccacttttaccattcttgaaaggtgctttgaaccttataagtgagttggctgaaccaccaacacgaagttcttcgactatgtcac |
587 |
Q |
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| T |
24848907 |
agaatcttatttacaccacttttaccattcttgaaaggtgctttgaaccttataagtgagttagctgaaccaccaacacgaagttcttcgactatgtcac |
24849006 |
T |
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| Q |
588 |
cggtttgaagcatgtctccggtccattcgtcggattttgagctgcctttgtagcattctatggaaaggactttgaagtctcgagagggtgagtctgagga |
687 |
Q |
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| T |
24849007 |
cggtttgaagcatgtctccggtccattcgtcggattttgagctgcctttgtagcattctatggataggactttgaagtctcgagagggtgagtctgagga |
24849106 |
T |
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| Q |
688 |
ttttgagctgctttgtgaagatgatcggtccatggtcatggtttgtgaaggtttggat |
745 |
Q |
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| T |
24849107 |
ttttgagctgctttgtgaagatgatcggtccatggtcatggtttgtgaaggtttggat |
24849164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 24848429 - 24848651
Alignment:
| Q |
16 |
tataatctaattaatttgcaatattgtactgttccaagaaagacatgtnnnnnnnnnnnnnnntttt-ggagaacaaatatgtttagattaaatttgaat |
114 |
Q |
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| T |
24848429 |
tataatctaattaatttgcaatattgtactgttgcaagaaagacatgtaaaaaaaaacaaaaaaattaggagaacaaatatgtttagattaactttgaat |
24848528 |
T |
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| Q |
115 |
ttagcataatctatcatttgaa--ttcaaccaaatcaccatgttaccataattttattaaattcaccgtaatttcaaatatacatgaatccaact---ca |
209 |
Q |
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| T |
24848529 |
ttagcatattctatcatttgaagcttcaaccgaatcaccatgttaccgtaattttattaaattcaccgtaaattcaaatatacatgaatccaactcaaca |
24848628 |
T |
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| Q |
210 |
actattcaattttaaccatgtat |
232 |
Q |
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| T |
24848629 |
actattcaattttaaccatgtat |
24848651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 615
Target Start/End: Complemental strand, 42041497 - 42041448
Alignment:
| Q |
566 |
cgaagttcttcgactatgtcaccggtttgaagcatgtctccggtccattc |
615 |
Q |
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||||| |||||||||||||| |||||||||||||||||| | |||||||| |
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| T |
42041497 |
cgaagctcttcgactatgtcgccggtttgaagcatgtctactgtccattc |
42041448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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