View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7694_high_5 (Length: 509)

Name: NF7694_high_5
Description: NF7694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7694_high_5
NF7694_high_5
[»] chr8 (2 HSPs)
chr8 (14-417)||(35249810-35250213)
chr8 (414-495)||(35250992-35251073)
[»] chr7 (8 HSPs)
chr7 (413-495)||(5289557-5289639)
chr7 (413-495)||(5310577-5310659)
chr7 (417-495)||(5284492-5284570)
chr7 (417-495)||(5315295-5315373)
chr7 (417-495)||(5302680-5302758)
chr7 (413-495)||(46706848-46706930)
chr7 (42-70)||(36232131-36232159)
chr7 (47-83)||(46833164-46833200)
[»] chr3 (3 HSPs)
chr3 (414-493)||(37863252-37863331)
chr3 (417-495)||(37859224-37859302)
chr3 (414-495)||(39030252-39030333)
[»] chr5 (8 HSPs)
chr5 (413-495)||(1478179-1478261)
chr5 (417-495)||(1492352-1492430)
chr5 (417-495)||(1482377-1482455)
chr5 (417-495)||(1505161-1505239)
chr5 (42-80)||(22703827-22703865)
chr5 (42-80)||(39668781-39668819)
chr5 (42-83)||(2078537-2078578)
chr5 (43-80)||(3292688-3292725)
[»] chr2 (7 HSPs)
chr2 (413-494)||(24163651-24163732)
chr2 (42-81)||(11992964-11993003)
chr2 (42-83)||(1648065-1648106)
chr2 (42-81)||(37520648-37520687)
chr2 (45-83)||(16290803-16290841)
chr2 (42-74)||(23766909-23766941)
chr2 (42-74)||(23796102-23796134)
[»] chr1 (14 HSPs)
chr1 (413-495)||(44128754-44128836)
chr1 (413-495)||(44132959-44133041)
chr1 (413-495)||(44141381-44141463)
chr1 (42-83)||(52921036-52921077)
chr1 (42-83)||(4001903-4001944)
chr1 (42-83)||(6985612-6985653)
chr1 (42-83)||(8670804-8670845)
chr1 (42-83)||(32079362-32079403)
chr1 (42-83)||(49350470-49350511)
chr1 (42-83)||(49527434-49527475)
chr1 (43-83)||(6039644-6039684)
chr1 (42-82)||(15424509-15424549)
chr1 (42-82)||(51850818-51850858)
chr1 (46-82)||(52463087-52463123)
[»] scaffold0279 (1 HSPs)
scaffold0279 (42-83)||(18440-18481)
[»] scaffold0001 (1 HSPs)
scaffold0001 (42-83)||(440141-440182)
[»] chr6 (1 HSPs)
chr6 (42-83)||(6079632-6079673)
[»] chr4 (1 HSPs)
chr4 (42-83)||(27453163-27453204)
[»] scaffold0024 (1 HSPs)
scaffold0024 (42-82)||(48257-48297)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 35249810 - 35250213
Alignment:
Q  14 aagaagagggctgtgataggcttcgacagacagccaacataaaactttgtcgaatctctataacatggactattattgttgtattggtatccttaatgtc 113  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35249810 aagaagagggttgtgataggcctcgacagacaaccaacataaaactttgtcgaatctctataacatggaccattattgttgtattggtatccttaatgtc 35249909  T
Q  114 cctccttagttaatgtagcttataggatcaattacactacacattccatttaagctcaaaacaactcacttctgattttttctatcattcagcatgttgt 213  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  35249910 cctccttagttaatttagcttataggatcaattacactacacattctatttaagctcaaaacaactcacttataattttttctatcattcagcatgttgt 35250009  T
Q  214 gattgatagaagcacacgattattttgggcaaatgtgggttggtacgaggagaccagtcttgaatgagtcgaagttgacattcataccactcttttacga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35250010 gattgatagaagcacacgattattttgggcaaatgtgggttggtacgaggagaccagtcttgaatgagtcgaagttgacattcataccactcttttacga 35250109  T
Q  314 acacgcaaccagcaactagtgttatgtgacttgtgtccttcttcaccacacccaataataaatcattttcttattacaaattattcttattattattacg 413  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35250110 acacgcaaccagcaactagagttatgtgacttgtgtccttcttcaccacacccaataataaatcattttcttattacaaattattcttattattattacg 35250209  T
Q  414 tata 417  Q
    ||||    
T  35250210 tata 35250213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 35250992 - 35251073
Alignment:
Q  414 tatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35250992 tatatgatgtaccaacaagggtgtttcgctggtggtatggttcttcgtttggctaaagatttggctgagaacaataaaggtg 35251073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 413 - 495
Target Start/End: Complemental strand, 5289639 - 5289557
Alignment:
Q  413 gtatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||||||||||||  || ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||    
T  5289639 gtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtg 5289557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 413 - 495
Target Start/End: Original strand, 5310577 - 5310659
Alignment:
Q  413 gtatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||||||||||||  || ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||    
T  5310577 gtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtg 5310659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 5284492 - 5284570
Alignment:
Q  417 atgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||||||||  || ||||||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  5284492 atgatgtaccaacaagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtg 5284570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 5315295 - 5315373
Alignment:
Q  417 atgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    |||||||||||||||||||| |  || ||||| ||||| || ||||||||||||||||||||||||||||| |||||||    
T  5315295 atgatgtaccaacaagggtgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtg 5315373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 5302680 - 5302758
Alignment:
Q  417 atgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||||||||  || ||||| ||||| ||||||||||| |||||| | ||||||||||| |||||||    
T  5302680 atgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatctagctgagaacaacaaaggtg 5302758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 495
Target Start/End: Complemental strand, 46706930 - 46706848
Alignment:
Q  413 gtatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||||||| || |  || || || ||||  |||||||||||||| ||||||||||||||||| |||||||    
T  46706930 gtatatgatgtaccaacaaggttgctttgcaggaggcacggggcttcgtttggctaacgatttggctgagaacaacaaaggtg 46706848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 36232131 - 36232159
Alignment:
Q  42 gacagccaacataaaactttgtcgaatct 70  Q
    |||||||||||||||||||||||||||||    
T  36232131 gacagccaacataaaactttgtcgaatct 36232159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 46833200 - 46833164
Alignment:
Q  47 ccaacataaaactttgtcgaatctctataacatggac 83  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  46833200 ccaacgtaaaactttgtcgaatctctatgacatggac 46833164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 493
Target Start/End: Complemental strand, 37863331 - 37863252
Alignment:
Q  414 tatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaagg 493  Q
    ||||||||||| |||||||| ||||  |||||||| ||||| |||||||||||||||||||||||||| ||||| |||||    
T  37863331 tatatgatgtatcaacaaggttgttttgctggtgggacggtgcttcgtttggctaaagatttggctgaaaacaacaaagg 37863252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 495
Target Start/End: Complemental strand, 37859302 - 37859224
Alignment:
Q  417 atgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||| ||||  |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||    
T  37859302 atgatgtaccaacaaggttgttttgctggtggcacggtgcttcgtttggctaaagacttggctgaaaacaacaaaggtg 37859224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 39030252 - 39030333
Alignment:
Q  414 tatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    |||||||||||||||||||| ||||  |||||||  | || |||||| |||||||||||||||||||||||||| |||||||    
T  39030252 tatatgatgtaccaacaaggttgttttgctggtgcgatggctcttcgcttggctaaagatttggctgagaacaacaaaggtg 39030333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 413 - 495
Target Start/End: Original strand, 1478179 - 1478261
Alignment:
Q  413 gtatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||||||| ||||  || ||||| ||||| ||||||||||| || || ||||||||||||||||||||||    
T  1478179 gtatatgatgtaccaacaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaataaaggtg 1478261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 1492352 - 1492430
Alignment:
Q  417 atgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||| ||||| ||||  || ||||| ||||| |||||||||||||| ||||||||||||||||| |||||||    
T  1492352 atgatgtaccagcaaggttgttttgcaggtggcacggtacttcgtttggctaaggatttggctgagaacaacaaaggtg 1492430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 1482377 - 1482455
Alignment:
Q  417 atgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||| || |  || ||||| ||||| ||||||||||| || || ||||||||||| ||||||||||    
T  1482377 atgatgtaccaacaaggatgctttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaataataaaggtg 1482455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 1505161 - 1505239
Alignment:
Q  417 atgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||| ||||| ||||  || ||||| ||||| ||||||||||| || || |||||||||||||| |||||||    
T  1505161 atgatgtaccagcaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaacaaaggtg 1505239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 22703865 - 22703827
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatg 80  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  22703865 gacagccaacacaaaactttgtcgaatttctataacatg 22703827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 39668819 - 39668781
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatg 80  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  39668819 gacagccaacgtaaaactttgtcgaatctctatgacatg 39668781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 2078578 - 2078537
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||||||||  |||||||||||||||||||||| ||||||||    
T  2078578 gacagccaaagtaaaactttgtcgaatctctatgacatggac 2078537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 3292688 - 3292725
Alignment:
Q  43 acagccaacataaaactttgtcgaatctctataacatg 80  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  3292688 acagccaacataaaactttgtcgaatcactatgacatg 3292725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 494
Target Start/End: Complemental strand, 24163732 - 24163651
Alignment:
Q  413 gtatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggt 494  Q
    ||||||||||||||||||||||||||  || ||||| ||||| ||||| ||||| || || |||||||||||||| ||||||    
T  24163732 gtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaaggt 24163651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 11992964 - 11993003
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatgg 81  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  11992964 gacagccaacataaaactttgtcgaatctctatgacatgg 11993003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 1648065 - 1648106
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  1648065 gacagccaacgtaaaactttgtcgaatctctatgacatggac 1648106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 37520648 - 37520687
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatgg 81  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  37520648 gacagccaacgtaaaactttgtcgaatctctatgacatgg 37520687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 16290803 - 16290841
Alignment:
Q  45 agccaacataaaactttgtcgaatctctataacatggac 83  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  16290803 agccaacgtaaaactttgtcgaatctctatgacatggac 16290841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 23766941 - 23766909
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctat 74  Q
    |||||||||| ||||||||||||||||||||||    
T  23766941 gacagccaacgtaaaactttgtcgaatctctat 23766909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 23796134 - 23796102
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctat 74  Q
    |||||||||| ||||||||||||||||||||||    
T  23796134 gacagccaacgtaaaactttgtcgaatctctat 23796102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 495
Target Start/End: Original strand, 44128754 - 44128836
Alignment:
Q  413 gtatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||||||| || |  || || || ||||| |||||||||||||||||||| ||||| ||||| |||||||    
T  44128754 gtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtg 44128836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 495
Target Start/End: Original strand, 44132959 - 44133041
Alignment:
Q  413 gtatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||||||| || |  || || || ||||| |||||||||||||||||||| ||||| ||||| |||||||    
T  44132959 gtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtg 44133041  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 495
Target Start/End: Original strand, 44141381 - 44141463
Alignment:
Q  413 gtatatgatgtaccaacaagggtgttccgctggtggtacggttcttcgtttggctaaagatttggctgagaacaataaaggtg 495  Q
    ||||||||||||||||||||| || |  || || || ||||| |||||||||||||||||||| ||||| ||||| |||||||    
T  44141381 gtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtg 44141463  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 52921036 - 52921077
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  52921036 gacagccaacataaaactttgtcgaatctctatgacatggac 52921077  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 4001903 - 4001944
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  4001903 gacagccaacgtaaaactttgtcgaatctctatgacatggac 4001944  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 6985653 - 6985612
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  6985653 gacagccaacgtaaaactttgtcgaatctctatgacatggac 6985612  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 8670845 - 8670804
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  8670845 gacagccaatgtaaaactttgtcgaatctctataacatggac 8670804  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 32079362 - 32079403
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  32079362 gacagccaacgtaaaactttgtcgaatctctatgacatggac 32079403  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 49350511 - 49350470
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  49350511 gacagccaacgtaaaactttgtcgaatctctatgacatggac 49350470  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 49527475 - 49527434
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||||||||| ||||||||||| |||||||||| ||||||||    
T  49527475 gacagccaacgtaaaactttgttgaatctctatgacatggac 49527434  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 6039644 - 6039684
Alignment:
Q  43 acagccaacataaaactttgtcgaatctctataacatggac 83  Q
    ||||||||| ||||||||||| |||||||||| ||||||||    
T  6039644 acagccaacgtaaaactttgttgaatctctatgacatggac 6039684  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 15424549 - 15424509
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatgga 82  Q
    |||| ||||| |||||||||||| |||||||||||||||||    
T  15424549 gacaaccaacgtaaaactttgtcaaatctctataacatgga 15424509  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 51850818 - 51850858
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatgga 82  Q
    |||| |||||||||||||| ||||||||||||| |||||||    
T  51850818 gacatccaacataaaacttcgtcgaatctctatgacatgga 51850858  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 52463123 - 52463087
Alignment:
Q  46 gccaacataaaactttgtcgaatctctataacatgga 82  Q
    |||||| |||||||||||||||||||||| |||||||    
T  52463123 gccaacttaaaactttgtcgaatctctatgacatgga 52463087  T

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Target: scaffold0279 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 18440 - 18481
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||| ||||| |||||||||||||||||||||| ||||||||    
T  18440 gacaaccaacgtaaaactttgtcgaatctctatgacatggac 18481  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 440141 - 440182
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||||||||| |||||||||||| ||||||||| ||||||||    
T  440141 gacagccaacgtaaaactttgtcaaatctctatgacatggac 440182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 6079632 - 6079673
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    ||||| |||| |||||||||||||||||||||| ||||||||    
T  6079632 gacagtcaacgtaaaactttgtcgaatctctatgacatggac 6079673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 27453204 - 27453163
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatggac 83  Q
    |||||||||| |||||||||| ||||||||||| ||||||||    
T  27453204 gacagccaacgtaaaactttgccgaatctctatgacatggac 27453163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 48297 - 48257
Alignment:
Q  42 gacagccaacataaaactttgtcgaatctctataacatgga 82  Q
    ||||||||||||| |||||| |||||||||||| |||||||    
T  48297 gacagccaacatataactttatcgaatctctatgacatgga 48257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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