View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7694_high_7 (Length: 330)
Name: NF7694_high_7
Description: NF7694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7694_high_7 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 5899 - 5579
Alignment:
| Q |
18 |
agaaacaagcaattttgtgcagctacagaaatatcattcagagaattttgtgcagctagc------------------tactcaaaatggtcctgtaaaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
5899 |
agaaacaagcaattttgtgcagctacagaaatatcattcaaagaattttgtgcagctacaaaaaaatattttatatcatactcaaaatggtcctgtaaaa |
5800 |
T |
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| Q |
100 |
attgtactcaaactaaacaaagatgtggggatttccacttgcctttacacaagcaggtttagaattgaaaaacaacacagttattatgcaataagttact |
199 |
Q |
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| T |
5799 |
attgtactcaaactaaacaaagatgtggggatttccacctgcctttacacaaacaggtttagaattgaaaaacaacacagttattatgcaataagttact |
5700 |
T |
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| Q |
200 |
acaaaatacaaatgtttccaaagaaagtctaaataaacatcaagagggacattaatgtcttaactagaacagatactatggctgaagagaatgtagctcc |
299 |
Q |
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| T |
5699 |
acaaaatacaaatgtttccaaagaaagtctaaataaacatcaagagggacattaatgtcttaactagaacagatactatggctgaagtgaatgtagctcc |
5600 |
T |
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| Q |
300 |
aataagcctctttcatctcac |
320 |
Q |
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| T |
5599 |
aataagcctctttcatctcac |
5579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 19313 - 19033
Alignment:
| Q |
18 |
agaaacaagcaattttgtgcagctacagaaatatcattcagagaattttgtgcagcta-----gctactcaa---------aatggtcctgtaaaaattg |
103 |
Q |
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| T |
19313 |
agaaaccagcatgtttgtgcagctacagaaatatcattcagagaattttgtgcagctacagaagattttctatcatactcgaatggtcatgcaaaaaatg |
19214 |
T |
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| Q |
104 |
tactcaaactaaacaaagatgtggggatttccacttgcctttacacaagcaggtttagaattgaaaaacaacacagttattatgcaataagttactacaa |
203 |
Q |
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| T |
19213 |
tactcaaactacaaaaagatgtggggattttcacttgcgtttacacaaacaagtttataatagaaaatcaatacagttattatgcaataagttattacaa |
19114 |
T |
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| Q |
204 |
aatacaaatgtttccaaagaaagtcta---aataaacatcaagagggacattaatgtcttaactagaacagatactatggc |
281 |
Q |
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||||||||||||| |||||||| | || ||||||||||||||| | ||||||||||||||||||||||||||| ||||| |
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| T |
19113 |
aatacaaatgttttcaaagaaaatataaataataaacatcaagagagccattaatgtcttaactagaacagatacgatggc |
19033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 42300482 - 42300419
Alignment:
| Q |
257 |
tcttaactagaacagatactatggctgaagagaatgtagctccaataagcctctttcatctcac |
320 |
Q |
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| T |
42300482 |
tcttaactagaacagatactatagctgaagagaatgtaactccaataagcctctttcatctcac |
42300419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 22472266 - 22472333
Alignment:
| Q |
249 |
cattaatgtcttaactagaacagatactatggctgaagagaatgtagctccaataagcctctttcatc |
316 |
Q |
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| T |
22472266 |
cattaatgtcttctatacaacaaatactatagctgaagagaatttagctacaataagcctctttcatc |
22472333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 315
Target Start/End: Original strand, 31442049 - 31442079
Alignment:
| Q |
285 |
agagaatgtagctccaataagcctctttcat |
315 |
Q |
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| T |
31442049 |
agagaatgtagctccaataagcctctttcat |
31442079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 2907400 - 2907296
Alignment:
| Q |
83 |
aaaatggtcctgtaaaaattgtactcaaactaaaca--aagatgtggggatttccacttgcctttacacaagcaggtttagaattgaaaaacaacacagt |
180 |
Q |
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||||||| |||||||||| |||||||||| ||| || |||| | ||||| ||||||| ||||||||| |||| ||||||| ||||||||||||| |
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| T |
2907400 |
aaaatggccctgtaaaaagtgtactcaaattaatcatcaagagtttaagattttcacttgcttttacacaaacaggagtagaattataaaacaacacagt |
2907301 |
T |
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| Q |
181 |
tatta |
185 |
Q |
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||||| |
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| T |
2907300 |
tatta |
2907296 |
T |
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