View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7694_low_16 (Length: 201)
Name: NF7694_low_16
Description: NF7694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7694_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 34254875 - 34255056
Alignment:
| Q |
1 |
tcaaccaaccaattttcatgtatgccaattgaatcaaatcaaattatattaataatctttttgtgcagctgaggactctctcatatttctcttgaagtgg |
100 |
Q |
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| T |
34254875 |
tcaaccaaccaattttcatgtatgccaattgaatcaaatcaaattatattaataatctttttgtgcagctgaggactctctcatatttctcttgaagtgg |
34254974 |
T |
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| Q |
101 |
tttgagcgttttcctcagtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgtgata |
182 |
Q |
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| T |
34254975 |
tttgagcgttttcctcggtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgagata |
34255056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 26627673 - 26627852
Alignment:
| Q |
4 |
accaaccaattttcatgtatgccaattgaatcaaatcaaattatattaataat-ctttttgtgcagctgaggactctctcatatttctcttgaagtggtt |
102 |
Q |
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| T |
26627673 |
accaaccatttttcatgtatgtcaattgaatcgaagcaaattaaattattaattcgttatgtgcagctgaggataatctcatatttctattgaagtggtt |
26627772 |
T |
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| Q |
103 |
tgagcgttttcctcagtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgtgata |
182 |
Q |
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| T |
26627773 |
tgagcgttttccccagtataaaaacacagactttttcatcagtggtgagagctatgcaggtaaacacaaatggtgagata |
26627852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 26635247 - 26635416
Alignment:
| Q |
19 |
tgtatgccaattgaatcaaatcaaattatattaataat-ctttttgtgcagctgaggactctctcatatttctcttgaagtggtttgagcgttttcctca |
117 |
Q |
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| T |
26635247 |
tgtatgacgattgaatcaaattaaattaatttaataattctttatgtgcagctgaggataatctcatatttcttttaaagtggtttgagcgttttcccca |
26635346 |
T |
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| Q |
118 |
gtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgtgataaatga |
187 |
Q |
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||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| |||| |
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| T |
26635347 |
gtacaaaaaaacagactttttcatcagtggtgagagctatgcaggtaaacgcaaatggtgagatagatga |
26635416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 26642475 - 26642600
Alignment:
| Q |
57 |
ctttttgtgcagctgaggactctctcatatttctcttgaagtggtttgagcgttttcctcagtataaagaaacagactttttcattagtggtgagagcta |
156 |
Q |
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| T |
26642475 |
ctttatgtgcagctgaggataatctcatatttctattaaagtggtttgagcgttttccccagtacaaaaaaacagactttttcatcagtggtgagagcta |
26642574 |
T |
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| Q |
157 |
tgcaggtaaatacaaatggtgtgata |
182 |
Q |
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||||||||| |||| ||||| |||| |
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| T |
26642575 |
tgcaggtaagcacaagtggtgggata |
26642600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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