View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7694_low_3 (Length: 536)
Name: NF7694_low_3
Description: NF7694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7694_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 43578530 - 43578022
Alignment:
| Q |
18 |
tgtagaacatcactggttttagaacagttgttgagnnnnnnnngtaaaattccaacgggggattcttgagcagcttttcttctggctttggttgaaagct |
117 |
Q |
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| T |
43578530 |
tgtagaacatcactggttttagaacagttgttgagttttttttgtaaaattccaacgggggattcttgagcagcttttcttctggctttggttgaaagct |
43578431 |
T |
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| Q |
118 |
tgatggggtgagtggttgattcagtgttgttttgggaagtgggtgtttgagataaagtgttgttgatggtggtggtagtgaagggaagagtggcacggtt |
217 |
Q |
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| T |
43578430 |
tgatggggtgagtggttgattcagtgttgttttgggaagtgggtgtttgagataaagtgttgttgatggtggtggtagtgaagggaagagtggcacggtt |
43578331 |
T |
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| Q |
218 |
gaaagtgtgtttgagagagaaagaagatagaaatgggcgatgggtgagaatagaaaaaagaggggtgcgtttggccattgaaacggttccacgcagcatt |
317 |
Q |
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| T |
43578330 |
gaaagtgtgtttgagagagaaagaagatagaaatgggcgatgggtgagaatagaaaaaagaggggtgcgtttggccattgaaacggttccacgcagcatt |
43578231 |
T |
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| Q |
318 |
tcgttaaagaaagaaaacaaagagagaggaaaacgacctcggacctgtgatgttgtttgtgttcaaaaccctatccatatatgtcccgcgtacttcgtct |
417 |
Q |
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| T |
43578230 |
tcgttaaagaaagaaaacaaagagagaggaaaacgacctcggacctgtgatgttgtttgtgttcaaaaccctatccatatatgtcccgcgtacttcgtc- |
43578132 |
T |
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| Q |
418 |
cttgatgatgttctgttctgcggaccgtgattcactgcagtcataaatttgataaggtcaagcagtcaaacaaaagataaccatccgatctaatcaacgc |
517 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
43578131 |
--------tgttctgttctgcggaccgtgattcactgcagtccttaatttgataaggtcacgcagtcaaacaaaagatagccatccgatctaatcaacgc |
43578040 |
T |
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| Q |
518 |
tgtagattcttctctctc |
535 |
Q |
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| T |
43578039 |
tgtagattcttctttctc |
43578022 |
T |
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