View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7695_low_1 (Length: 467)
Name: NF7695_low_1
Description: NF7695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7695_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 41979767 - 41980215
Alignment:
| Q |
1 |
tgtgtgatataaatattaacccatcatctgttcatttaattgccaatcaaacctattctaccattaaccttactcttgactgaaagcaggaagtgtgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41979767 |
tgtgtgatataaatattaacccatcatctgttcatttaattgccaatcaaacctattctaccattaaccttactcttgactgaaagcaggaagtgtgcaa |
41979866 |
T |
|
| Q |
101 |
attagtacaaattatgtattaatggttgacagttgagagtaagagtaaaatagcagaaaatttgaaagaatgaattacatttcagtaatgaggagagcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41979867 |
attagtacaaattatgtattaatggttgacagttgagagtaagagtaaaatagcagaaaatttgaaagaatgaattacatttcagtaatgaggagagcag |
41979966 |
T |
|
| Q |
201 |
ttttatcatcactcatacggcagctaacaccctcccaagcatcccaagttgtaggagcacaaggatcaccattccatcccattctacctggaactcgaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41979967 |
ttttatcatcactcatacggcagctaacaccctcccaagcatcccaagttgtaggagcacaaggatcaccattccatcccattctacctggaactcgaag |
41980066 |
T |
|
| Q |
301 |
tgattccttcaatgccttcatagcacttactacaaaacaatcacccataagctataaagaccgatacgacactaacattaccaccactgatgcataaaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41980067 |
cgattccttcaatgccttcatagcacttactacaaaacaatcacccataagctataaagaccgatacgacactaacattaccaccactgatgcataaaca |
41980166 |
T |
|
| Q |
401 |
gttgtaataatttaaaaaactcaaagtgattgaatataaccacattcgt |
449 |
Q |
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| T |
41980167 |
gttataataatttaaaaaactcaaagtgattgaatataaccacattcgt |
41980215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 321
Target Start/End: Complemental strand, 22085019 - 22084892
Alignment:
| Q |
194 |
agagcagttttatcatcactcatacggcagctaacaccctcccaagcatcccaagttgtaggagcacaaggatcaccattccatcccattctacctggaa |
293 |
Q |
| |
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|||||||| ||||| | ||||||||| || |||| |||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| | |||| |
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| T |
22085019 |
agagcagtattatccttactcatacgacatgtaactccctcccaagcatcccaattagtaggtgcacaaggatcaccattccaacccattctttcaggaa |
22084920 |
T |
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| Q |
294 |
ctcgaagtgattccttcaatgccttcat |
321 |
Q |
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| | |||||| |||||||| || ||||| |
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| T |
22084919 |
ccctaagtgaatccttcaaagctttcat |
22084892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 35818983 - 35819031
Alignment:
| Q |
393 |
cataaacagttgtaataatttaaaaaactcaaagtgattgaatataacc |
441 |
Q |
| |
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|||| ||| |||||||||||||||||| | ||| ||||||||||||||| |
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| T |
35818983 |
catagacacttgtaataatttaaaaaaataaaaatgattgaatataacc |
35819031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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