View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7695_low_3 (Length: 293)

Name: NF7695_low_3
Description: NF7695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7695_low_3
NF7695_low_3
[»] chr1 (5 HSPs)
chr1 (153-293)||(42126117-42126257)
chr1 (20-156)||(42126285-42126421)
chr1 (52-85)||(9539762-9539795)
chr1 (51-85)||(23347810-23347844)
chr1 (52-85)||(10781365-10781398)
[»] chr3 (3 HSPs)
chr3 (51-118)||(24309797-24309864)
chr3 (51-85)||(7856451-7856485)
chr3 (51-85)||(36475421-36475455)
[»] chr6 (1 HSPs)
chr6 (51-85)||(16461747-16461781)
[»] chr4 (5 HSPs)
chr4 (51-85)||(2813943-2813977)
chr4 (51-83)||(4377192-4377224)
chr4 (51-85)||(36247781-36247815)
chr4 (51-96)||(52849846-52849891)
chr4 (53-85)||(1758223-1758255)
[»] chr2 (2 HSPs)
chr2 (51-85)||(18703765-18703799)
chr2 (53-85)||(7700293-7700325)
[»] chr8 (2 HSPs)
chr8 (51-91)||(10381369-10381409)
chr8 (51-85)||(44873239-44873273)
[»] chr7 (1 HSPs)
chr7 (51-85)||(34346925-34346959)
[»] chr5 (2 HSPs)
chr5 (51-85)||(34751195-34751229)
chr5 (51-85)||(36744891-36744925)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 153 - 293
Target Start/End: Complemental strand, 42126257 - 42126117
Alignment:
Q  153 ccaactcagttatccgagagaactgacctgatgtgttttggaccatccagttcagacgggttgggtcggttattgttatttttgtccagccctaaaaacc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42126257 ccaactcagttatccgagagaactgacctgatgtgttttggaccatccagttcaaacgggttgggtcggttattgttatttttgtccagccctaaaaacc 42126158  T
Q  253 atctaatcttctatcaggattacttaaccttaggtgaacac 293  Q
    |||||||||||||| |||||||||| ||||||| |||||||    
T  42126157 atctaatcttctattaggattacttgaccttagatgaacac 42126117  T

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Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 42126421 - 42126285
Alignment:
Q  20 gacttaggcctccaatttcatgttatcatcctaatatagtttgcattattgtttctttgaaattttggcctcgtatgaaccagaagtctagattcaccca 119  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  42126421 gacttaggcctccaatttcatgttatcatcctaacatagtttgcattattgtttctttgaaattttgacctcgtatgaaccagaagtctagattcatcca 42126322  T
Q  120 tgcactgggccaataattccaacttataaccgaccaa 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  42126321 tgcactgggccaataattccaacttataaccgaccaa 42126285  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 9539762 - 9539795
Alignment:
Q  52 aatatagtttgcattattgtttctttgaaatttt 85  Q
    ||||||||||||||||||||||||||||||||||    
T  9539762 aatatagtttgcattattgtttctttgaaatttt 9539795  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 23347844 - 23347810
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    ||||||||||||||||||||||| |||||||||||    
T  23347844 taatatagtttgcattattgtttatttgaaatttt 23347810  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 10781365 - 10781398
Alignment:
Q  52 aatatagtttgcattattgtttctttgaaatttt 85  Q
    |||||||||||||||||||||||||| |||||||    
T  10781365 aatatagtttgcattattgtttctttaaaatttt 10781398  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 24309864 - 24309797
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaattttggcctcgtatgaaccagaagtctagattcaccc 118  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||| |||  |||||| ||| |||||    
T  24309864 taatatagtttgcattattgtttctttgaaattttagcttcgcatgtacctaaagtctggatccaccc 24309797  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 7856485 - 7856451
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    ||||||| |||||||||||||||||||||||||||    
T  7856485 taatataatttgcattattgtttctttgaaatttt 7856451  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 36475455 - 36475421
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    ||||||||||||| |||||||||||||||||||||    
T  36475455 taatatagtttgcgttattgtttctttgaaatttt 36475421  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 16461747 - 16461781
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    |||||||||||||||||||||||||||||||||||    
T  16461747 taatatagtttgcattattgtttctttgaaatttt 16461781  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 2813977 - 2813943
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    |||||||||||||||||||||||||||||||||||    
T  2813977 taatatagtttgcattattgtttctttgaaatttt 2813943  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 4377224 - 4377192
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatt 83  Q
    |||||||||||||||||||||||||||||||||    
T  4377224 taatatagtttgcattattgtttctttgaaatt 4377192  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 36247815 - 36247781
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    ||||||||||||||||||||||||||| |||||||    
T  36247815 taatatagtttgcattattgtttctttaaaatttt 36247781  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 52849846 - 52849891
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaattttggcctcgtatg 96  Q
    |||||||||||| |||||||||||||| ||||||| ||||| ||||    
T  52849846 taatatagtttgtattattgtttctttaaaattttagcctcatatg 52849891  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 1758255 - 1758223
Alignment:
Q  53 atatagtttgcattattgtttctttgaaatttt 85  Q
    ||||||||| |||||||||||||||||||||||    
T  1758255 atatagtttacattattgtttctttgaaatttt 1758223  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 18703765 - 18703799
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    |||||||||||||||||||||||||||||||||||    
T  18703765 taatatagtttgcattattgtttctttgaaatttt 18703799  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 7700325 - 7700293
Alignment:
Q  53 atatagtttgcattattgtttctttgaaatttt 85  Q
    ||||||||| |||||||||||||||||||||||    
T  7700325 atatagtttacattattgtttctttgaaatttt 7700293  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 10381409 - 10381369
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaattttggcctc 91  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  10381409 taatatagtttacattattgtttctttgaaattttagcctc 10381369  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 44873273 - 44873239
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    ||||||||||||||||||||||||||| |||||||    
T  44873273 taatatagtttgcattattgtttctttaaaatttt 44873239  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 34346925 - 34346959
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    |||| ||||||||||||||||||||||||||||||    
T  34346925 taatgtagtttgcattattgtttctttgaaatttt 34346959  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 34751195 - 34751229
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    ||||||| |||||||||||||||||||||||||||    
T  34751195 taatataatttgcattattgtttctttgaaatttt 34751229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 36744925 - 36744891
Alignment:
Q  51 taatatagtttgcattattgtttctttgaaatttt 85  Q
    ||||||||||||||||||||||||||| |||||||    
T  36744925 taatatagtttgcattattgtttctttaaaatttt 36744891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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