View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7695_low_4 (Length: 293)
Name: NF7695_low_4
Description: NF7695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7695_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 48416663 - 48416917
Alignment:
| Q |
11 |
agaatatgtgctgcaataccacatccaaaacaacatggggactccaaaatttgtgctgcatattatagaataaaaatcttagctcaatgtccaaacatag |
110 |
Q |
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| T |
48416663 |
agaatgtgtgctgcaatatcacatccaaaacaacacggggactccaaaatttgtgctgcatattatagaataaaaatcttagctcaatgtccaaacatag |
48416762 |
T |
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| Q |
111 |
acttggccccggctagctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtgggctttctagagtcatca |
210 |
Q |
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| T |
48416763 |
acttggccccagctagctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtgggctttctagagtcatca |
48416862 |
T |
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| Q |
211 |
cggttgccttttgaactgcagagacaacatcaactcctcttttctcactccccat |
265 |
Q |
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| T |
48416863 |
cggttgccttttgaactgcagagacaacatcaactcctcttttctcactccccat |
48416917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 48421911 - 48422117
Alignment:
| Q |
11 |
agaatatgtgctgcaataccacatccaaaacaacatggggactccaa-aatttgtgctgcatattatagaataaaaatcttagctcaatgtccaaacata |
109 |
Q |
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| T |
48421911 |
agaatttgtgctgcaataccacatccaaaacagtacggggactcagagaatttgtgttgcatattatagaataaaaatcttagctcaatgtccaaacata |
48422010 |
T |
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| Q |
110 |
gacttggccccggctag---ctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtgggctttctagagtc |
206 |
Q |
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| T |
48422011 |
gacctggcctccgctactacctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggatttgcagatatgggtggactctctagagtc |
48422110 |
T |
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| Q |
207 |
atcacgg |
213 |
Q |
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| T |
48422111 |
atcacgg |
48422117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 254
Target Start/End: Original strand, 48410398 - 48410581
Alignment:
| Q |
74 |
tatagaataaaaatcttagctcaatgtccaaacatagacttggccccggct---agctcctgctaacatcccaacctcataagagtgtgcatcaaattta |
170 |
Q |
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| T |
48410398 |
tatagaataaaattcttagcttgatgtccagatatagacctggcctccacttgtagctcctgctagcatcccaacctcacaagagtttgcatcaaatctg |
48410497 |
T |
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| Q |
171 |
agtggaattgcagatatgagtgggctttctagagtcatcacggttgccttttgaactgcagagacaacatcaactcctcttttc |
254 |
Q |
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| T |
48410498 |
catggaattgcagatatgtgtgggctctgtagtgtctttattgttgccctttgaactgtggagacaacgtcaactcctcttttc |
48410581 |
T |
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