View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7696_high_3 (Length: 372)
Name: NF7696_high_3
Description: NF7696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7696_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 31239554 - 31239184
Alignment:
| Q |
1 |
tccttctttctagcattctgatatgcttcgattcgcaatgtttgatttctcaagagcctctaaccttgccttgattatattcgccttgcgcagcacggca |
100 |
Q |
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| T |
31239554 |
tccttctttgtagcattctgatatgcttcgattcgcaatgtttgatttctcaagagcctctaaccttgccttgattatattcgccttgcgcagcacggca |
31239455 |
T |
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| Q |
101 |
accatatcggaatccattcggtctcttaacccgtgaagaactttcgcaatgtgagtggattttgtctcttcattcagttgctgaagatctaataagagat |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31239454 |
accatatcggaatccattcggtctcttaacccgcgaagaactttcgcaatgtgagtggattttgtctcttcattcagttgctgaagatctaataagagat |
31239355 |
T |
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| Q |
201 |
tggtgatctcttccatttcaaccttaattgcttcaacttgttggaagaattgagagaggttagggtcttgtgttgggttgaggttccctagttcaaggtc |
300 |
Q |
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| T |
31239354 |
tggtgatctcttccatttcaaccttaattgcttcaacttgttggaagaattgagagaggttagggtcttgtgtagggttgaggttccctagttcaaggtc |
31239255 |
T |
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| Q |
301 |
aacatcttcaaaatctttctgtgcctgtttcttcaattccacatgacttaggaacgattttgacatcaagt |
371 |
Q |
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| T |
31239254 |
aacatcttcaaaatctttctgtgcctgtttcttcaattccacatgacttaggaacgattttgtcatcaagt |
31239184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 7915162 - 7915533
Alignment:
| Q |
1 |
tccttctttctagcattctgatatgcttcgattcgcaatgtttgatttctcaagagcctctaaccttgccttgattatattcgccttgcgcagcacggca |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
7915162 |
tccttctttgtagcattctgatatgcttcgattcgcaatgttcgatttttgaagagcctctaacctagccttgataatatttgccttgcgcagcacggca |
7915261 |
T |
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| Q |
101 |
accatatcggaatccattcggtctcttaacccgtgaagaactttcgcaatgtgagtggattttgtctcttcattcagttgctgaagatctaataagagat |
200 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915262 |
accatatcggaatccattcgatctcttaacccgcgaagaactttcgcactgtgagtggattttgtctcttcattcagttgctgaagatctaataagagat |
7915361 |
T |
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| Q |
201 |
tggtgatctcttccatttcaaccttaattgcttcaacttgttggaagaattgagagaggttagggtcttgtgttgggttgaggttccctagttcaaggtc |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915362 |
tggtgatctcttccatttcaaccttgattgcttcaacttcttggaagaattgagagaggttagggtcttgtgttgggttgaggttccctagttcaaggtc |
7915461 |
T |
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| Q |
301 |
aacatcttcaaaatctttctgtgcctgtttcttcaattccacatgacttaggaacgattttgacatcaagtc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
7915462 |
aacatcttcaaaatctttctgtgcctgtttcttcaaatccacataacttaggaacgattttgtcatcaagtc |
7915533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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