View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7696_high_4 (Length: 322)
Name: NF7696_high_4
Description: NF7696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7696_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 1336467 - 1336171
Alignment:
| Q |
1 |
caagctatcacaaagtaagactttgtttcattcaatannnnnnnnactatatctaaaatttcgactaatgtatgtaaatgtaaatacatacataagctta |
100 |
Q |
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| T |
1336467 |
caagctatcacaaagtaagactttgtttcattcaatattttttttactttatctaaaatttcg------gtatgtaaatgtaaatacata----agctta |
1336378 |
T |
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| Q |
101 |
cattctcattatataaaccaattagctttgtcaccaaaaattaattaactaattactactaggtttagagtttaaaattatttagtgatgataaacgaag |
200 |
Q |
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| T |
1336377 |
cattctcattatataaaccaattagctttgtcaccaaaaattaattaactaattactactaggtttagagtttaaaattatttagtgatgataaacgaag |
1336278 |
T |
|
| Q |
201 |
ttttatgcaaactcatcatcatatttataatctatatattgtnnnnnnnnnntcatattgatataatcttatcaaatcataatattatttttaaaatatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1336277 |
ttttatgcaaactcatcatcatatttataatctatatattgt-caaaaaaaatcatattgatataatcttatcaaatcataatattatttttaaaatatg |
1336179 |
T |
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