View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7696_low_1 (Length: 745)
Name: NF7696_low_1
Description: NF7696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7696_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 660; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 16 - 734
Target Start/End: Original strand, 11800954 - 11801669
Alignment:
| Q |
16 |
gaaagattatcagtcacattatataattttttcttccttcattaattgttgatttagcattagaattacatgaaatccttgatcaatgatcatgtcataa |
115 |
Q |
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| T |
11800954 |
gaaagattatcagtcacattatataatttttt-ttccttcattaattgttgatttagcattagaattacatgaaatccttgatcaatgatcatgtcataa |
11801052 |
T |
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| Q |
116 |
ttcttgacaccatgttgtaattattaccattatagaatatatgttgtgacataattctaggacctaaattgatccaattaatttgcaagaaactaatatt |
215 |
Q |
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| T |
11801053 |
ttcttgacaccatgttgtaattattaccattatagaaaatatgttgtgacatgactctaggacctaaattgatccaattaatttgcaagaaactaatatt |
11801152 |
T |
|
| Q |
216 |
aatttttgttttgtttattaaagtacataattgcagggaattccattccaaatcaaaacctttcatcaatccaaataagcaaaaaccacaaagaacaaga |
315 |
Q |
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| T |
11801153 |
aattttt--tttgtttattaaagtacataattgcagggaattccattccaaatcaaaacctttcatcaatccaaataagcaaaaaccacaaagaacaaga |
11801250 |
T |
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| Q |
316 |
atttccgcttagatgctccaatggagaaaaagagacacaaacatgtccaagagactaccctacaaaacataagccaacaaatcaaaatagccatacttgt |
415 |
Q |
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| T |
11801251 |
atttccacttagatgcaccaatggagaaaaagagacacaaacatgtccaagagactaccctacaaaacataacccaacaaatcaaaatagccatacttgt |
11801350 |
T |
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| Q |
416 |
ccctcattctttagatggatccatgaagatttaaaagcatggaaagaaaaagggatcactagggaaatgttggagggtgcaaaaagaacagcaaatttta |
515 |
Q |
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| T |
11801351 |
ccttcattctttagatggatccatgaagatttaaaaccatggaaagaaaaagggatcactagggaaatgttggagggtgcaaaaagaacagcaaatttta |
11801450 |
T |
|
| Q |
516 |
aggttgtgattgtggatggaaaaatgtatgtggagaagtataagaagtcaattcaaacaagagatgtgttcactttgtggggtattttgcaattattgag |
615 |
Q |
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| T |
11801451 |
aggttgtgattgtggatggaaaaatgtatgtggagaagtataggaagtcaattcaaacaagagatgtgttcactttgtggggtattttgcaattattgag |
11801550 |
T |
|
| Q |
616 |
aatgtttcctggcaagttacctgatttggaacttatgtttgattgtgaagataggcctgttattcataagagtaattttcaaggtccaaatgcttcacca |
715 |
Q |
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| T |
11801551 |
aatgtttcctggcaagttacctgatttggaacttatgtttgattgtgaagataggcctgttattcataagggtaattttcaaggtccaaatgcttcacca |
11801650 |
T |
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| Q |
716 |
cctcctttgtttagatatt |
734 |
Q |
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| T |
11801651 |
cctcctttgtttagatatt |
11801669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 352 - 734
Target Start/End: Original strand, 11808569 - 11808951
Alignment:
| Q |
352 |
acaaacatgtccaagagactaccctacaaaacataagccaacaaatcaaaatagccatacttgtccctcattctttagatggatccatgaagatttaaaa |
451 |
Q |
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| T |
11808569 |
acaaaaatgtccaagagacaaccctacaacacataacccaacaaatctcaacaaccatgtttgtccctcatactttagatggatccatgaagatcttaaa |
11808668 |
T |
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| Q |
452 |
gcatggaaagaaaaagggatcactagggaaatgttggagggtgcaaaaagaacagcaaattttaaggttgtgattgtggatggaaaaatgtatgtggaga |
551 |
Q |
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| T |
11808669 |
ccatggagagaaaaagggatcacaaggaacatgttgaaaaaggcaaaaaagacagcacatttcaagcttgtgattgtggatggaaaaatgtatgtggaaa |
11808768 |
T |
|
| Q |
552 |
agtataagaagtcaattcaaacaagagatgtgttcactttgtggggtattttgcaattattgagaatgtttcctggcaagttacctgatttggaacttat |
651 |
Q |
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| T |
11808769 |
agtataggaagtcaattcaaacaagagatgtgttcactttgtggggtattttgcaattattgagattgtaccctggcaagttgcctgatttggaacttat |
11808868 |
T |
|
| Q |
652 |
gtttgattgtgaagataggcctgttattcataagagtaattttcaaggtccaaatgcttcaccacctcctttgtttagatatt |
734 |
Q |
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| T |
11808869 |
gtttgattgtgaagataagcctgttgttcctttggataagtttcaaggaccaaatgcttcaccaccaccattgtttagatatt |
11808951 |
T |
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Back To:
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