View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7696_low_2 (Length: 489)
Name: NF7696_low_2
Description: NF7696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7696_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 18607669 - 18607993
Alignment:
| Q |
1 |
ttgatgatttttgtttcattttttgtctgtttctccgtagctgggttacaaatatggcacttgaagaccttttttcnnnnnnntaaactcatataataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18607669 |
ttgatgatttttgtttcattttttgtctgtttctccgtagctgggttacaaatatggcacttgaagaccttttttcaaaaaaataaactcatataataat |
18607768 |
T |
|
| Q |
101 |
tttgatgttgcttaattatagaccttgattttctcttgtgacatgtaaaataaacttgtgtcaatttacaggatacacataaaggaataacttgtatctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18607769 |
tttgatgttgcttaattatagaccttgattttctcttgtgacatgtaaaataaacttgtgtcaatttacaggatacacataaaggaataacttgtatctg |
18607868 |
T |
|
| Q |
201 |
ataattccctttcataatgggatatttggtttgttgttggtcttgatctattacttataaaggtctaaagcaaaatatatattaacaaacgtcccttaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18607869 |
ataattccctttcataatgggatatttggtttgttgttggtcttgatctattacttataaaggtctaaagcaaaatatatattaacaaacgtcccttaga |
18607968 |
T |
|
| Q |
301 |
agtataaaggtgtccataaaggatt |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
18607969 |
agtataaaggtgtccataaaggatt |
18607993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 18608051 - 18608150
Alignment:
| Q |
383 |
cattacacaatggtataaccaagacaaaccaacagattagatgactacaaatgtaaatcgacaaaaatacttggtttacgagtcttcaaccaccaccaaa |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18608051 |
cattacacaatggtataaccaagacaaaccaacagattagatgactacaaatgtaaatcgacaaaaatacttggtttacgagtcttcaaccaccaccaaa |
18608150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 18602335 - 18602405
Alignment:
| Q |
6 |
gatttttgtttcattttttgtctgtttctccgtagctgggttacaaatatggcacttgaagaccttttttc |
76 |
Q |
| |
|
||||||||||||| | |||||| ||||| ||||| || |||||| |||||||||||||||| ||||||| |
|
|
| T |
18602335 |
gatttttgtttcactgtttgtcaccttctcagtagcaggattacaactatggcacttgaagacattttttc |
18602405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University