View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7696_low_5 (Length: 323)

Name: NF7696_low_5
Description: NF7696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7696_low_5
NF7696_low_5
[»] chr1 (1 HSPs)
chr1 (10-309)||(42487067-42487366)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 42487067 - 42487366
Alignment:
Q  10 aatattacgatcacctaagtcctcaagtgaaattttttataattaaatttgtattgaagtttactagaatcagattgatcaatgtgattaacaataacat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42487067 aatattacgatcacctaagtcctcaagtgaaattttttataattaaatttgtattgaagtttactagaatcagattgatcaatgtgattaacaataacat 42487166  T
Q  110 aaataatcatataaaggttaatttgatgttaataataatatttcaaatatcaaaaacgatttcccagatcttgatggtccctgtatatcacttacgccag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42487167 aaataatcatataaaggttaatttgatgttaataataatatttcaaatatcaaaaacgattttccagatcttgatggtccctgtatatcacttacgccag 42487266  T
Q  210 ctactattgtacctccttaactttcaattgttcactaagtttggttgacagtgctcagatattgtaccaattcttagtgtgtcctagctagttgctagtg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42487267 ctactattgtacctccttaactttcaattgttcactaagtttggttgacagtgctcagatattgtaccaattcttagtgtgtcctagctagttgctagtg 42487366  T

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