View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7696_low_7 (Length: 307)

Name: NF7696_low_7
Description: NF7696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7696_low_7
NF7696_low_7
[»] chr3 (11 HSPs)
chr3 (13-292)||(5483649-5483928)
chr3 (16-292)||(5803334-5803610)
chr3 (13-269)||(5524837-5525093)
chr3 (13-285)||(5445328-5445600)
chr3 (34-285)||(5453911-5454162)
chr3 (16-287)||(5849761-5850032)
chr3 (13-269)||(5501969-5502225)
chr3 (13-264)||(20342676-20342927)
chr3 (35-259)||(5829031-5829255)
chr3 (13-267)||(5489122-5489376)
chr3 (14-292)||(5854926-5855188)
[»] chr6 (1 HSPs)
chr6 (28-285)||(25810227-25810484)
[»] chr8 (4 HSPs)
chr8 (81-239)||(23392826-23392984)
chr8 (81-210)||(23285610-23285739)
chr8 (132-208)||(23341769-23341845)
chr8 (132-208)||(23385289-23385365)
[»] chr4 (3 HSPs)
chr4 (159-236)||(14520216-14520293)
chr4 (93-162)||(31732684-31732753)
chr4 (93-162)||(31745585-31745654)
[»] chr2 (1 HSPs)
chr2 (159-236)||(2691060-2691137)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 5483928 - 5483649
Alignment:
Q  13 aatattactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5483928 aatattactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcgagacaaggatccgaggagttcaaaaatgaagtaaa 5483829  T
Q  113 gatgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacaga 212  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5483828 gatgatggcaacacttcaacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacaga 5483729  T
Q  213 agcttggataactttatttttggtttgaactttcacaccaaccaaatttatttctctcaggtttactcttgccatgatgt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5483728 agcttggataactttatttttggtttgaactttcacaccaaccaaatttatttctctcaggtttactcttgccataatgt 5483649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 5803334 - 5803610
Alignment:
Q  16 attactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaagat 115  Q
    ||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |    
T  5803334 attactagggcttaatggtagatgggcaagagattgctgttaagaggctttctaaaacatcgggacaaggatccgaggagttcaaaaatgaagtaaagtt 5803433  T
Q  116 gatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacagaagc 215  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5803434 gatggcaacacttcaacaccgtaatctagtaaaacttcttggctgttctattcaacaagatgaaaagttgttgatctatgaattcatgcccaacagaagc 5803533  T
Q  216 ttggataactttatttttggtttgaactttcacaccaaccaaatttatttctctcaggtttactcttgccatgatgt 292  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  5803534 ttggattactttatttttggtttgaactttcacaccaaccaattttatttctctcaggtttactcttgccataatgt 5803610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 5525093 - 5524837
Alignment:
Q  13 aatattactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaa 112  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
T  5525093 aatattactagggtataatggtagatggccaagagattgctgttaagaggctagctaaaacatcgatacaaggatccgaggagttcaaaaatgaagtaaa 5524994  T
Q  113 gatgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacaga 212  Q
    ||||||||||||||||| |||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  5524993 gatgatggcaacacttcaacaccgtaatctagtaaaacttctcggctgttctattcgacaagatgaaaagttgttgatctacgaattcatgcccaataga 5524894  T
Q  213 agcttggataactttatttttggtttgaactttcacaccaaccaaatttatttctct 269  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  5524893 agcttggattactttatttttggtttgaactttctcaccaaccaaattaatttctct 5524837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 5445600 - 5445328
Alignment:
Q  13 aatattactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaa 112  Q
    ||||| |||||||  ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||    
T  5445600 aatatgactagggcgtaatggtagacggccaagagattgctgttaagaggctttctaaaacatcaggacaaggaactgaggagttcaaaaatgaagtaaa 5445501  T
Q  113 gatgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacaga 212  Q
    | ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5445500 gttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaaagatgttgatctacgaattcatgcccaacaga 5445401  T
Q  213 agcttggataactttatttttggtttgaactttcacaccaaccaaatttatttctctcaggtttactcttgcc 285  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||  ||| ||||||||    
T  5445400 agcttggatttctttatttttggtttgaactttcacaccaaccaaatttatttatctcaatttttctcttgcc 5445328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 34 - 285
Target Start/End: Complemental strand, 5454162 - 5453911
Alignment:
Q  34 tagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaagatgatggcaacacttcgaca 133  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||| ||||||||||||||| |||    
T  5454162 tagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagttcaaaaatgaagtaaagttgatggcaacacttcaaca 5454063  T
Q  134 ccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacagaagcttggataactttattttt 233  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  5454062 ccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacagaagcttggattgctttattttt 5453963  T
Q  234 ggtttgaactttcacaccaaccaaatttatttctctcaggtttactcttgcc 285  Q
    |||||||||||||||||||||||||||||||| |||||  ||| ||||||||    
T  5453962 ggtttgaactttcacaccaaccaaatttatttatctcaatttttctcttgcc 5453911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 5849761 - 5850032
Alignment:
Q  16 attactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaagat 115  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||||||||| ||| |||||  ||||||||   |||||||||||||||||||||||| |    
T  5849761 attactagggcttaatggtagatggccaagagattgctgttaagaggctttgtaatacatcgggacaaggagttgaggagttcaaaaatgaagtaaagtt 5849860  T
Q  116 gatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacagaagc 215  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5849861 gatggcaacacttcaacaccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctatgaattcatgcccaacagaagc 5849960  T
Q  216 ttggataactttatttttggtttgaactttcacaccaaccaaatttatttctctcaggtttactcttgccat 287  Q
    |||||| |||||||||||||||||||||||||||| |||| |||||||| || |||   |||||||||||||    
T  5849961 ttggattactttatttttggtttgaactttcacactaacctaatttattgctgtcattcttactcttgccat 5850032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 5502225 - 5501969
Alignment:
Q  13 aatattactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaa 112  Q
    |||||||| ||||| ||||| |||| |||||||||||||||||||| |||||||||||||||||   ||||||| |||||||||||||||||||||||||    
T  5502225 aatattaccagggtgtaatggtagacggccaagagattgctgttaaaaggctttctaaaacatcggcacaaggaaccgaggagttcaaaaatgaagtaaa 5502126  T
Q  113 gatgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacaga 212  Q
      ||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  5502125 cttgatggcaacacttcaacaccgtaatcttgttaaacttcttggttgttctattcaacaagatgaaaagttgttgatctatgaattcatggccaacaga 5502026  T
Q  213 agcttggataactttatttttggtttgaactttcacaccaaccaaatttatttctct 269  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  5502025 agcttggattactttatttttggtttgaactttctcaccaacgaaattaatttctct 5501969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 20342927 - 20342676
Alignment:
Q  13 aatattactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaa 112  Q
    |||||| |||||| |||||| |||||||||||||||| || |||||||||||||||||||||||  ||||||||   |||||||||||||||||||||||    
T  20342927 aatattcctagggcataatgatagatggccaagagatcgccgttaagaggctttctaaaacatcgggacaaggaattgaggagttcaaaaatgaagtaaa 20342828  T
Q  113 gatgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacaga 212  Q
    | ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  20342827 gttgatggcaacacttcaacaccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaaagatgttgatctatgaattcatgcccaacaga 20342728  T
Q  213 agcttggataactttatttttggtttgaactttcacaccaaccaaatttatt 264  Q
    |||||||||  |||||||||||||||||| ||||||||||||| ||||||||    
T  20342727 agcttggatttctttatttttggtttgaattttcacaccaacccaatttatt 20342676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 35 - 259
Target Start/End: Original strand, 5829031 - 5829255
Alignment:
Q  35 agatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaagatgatggcaacacttcgacac 134  Q
    |||||| ||||||||||||||||||||||| |||||||||||| |||||||| | ||||| |||||||||||||||||| ||||||||||||||| ||||    
T  5829031 agatggacaagagattgctgttaagaggctatctaaaacatcaggacaaggaactgaggaattcaaaaatgaagtaaagttgatggcaacacttcaacac 5829130  T
Q  135 cgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacagaagcttggataactttatttttg 234  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  5829131 cgtaatcttgtaaaactttttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgccaaacagaagcttggattactttatttttg 5829230  T
Q  235 gtttgaactttcacaccaaccaaat 259  Q
    ||||||||||||||||| |||||||    
T  5829231 gtttgaactttcacacctaccaaat 5829255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 5489376 - 5489122
Alignment:
Q  13 aatattactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaa 112  Q
    |||||||||||||  ||||| | || ||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||||||||||    
T  5489376 aatattactagggcgtaatggttgacggccaagagattgctgttaagaggctttctaaaacatcggcacaaggaaccgaggagttcaaaaatgaagtaaa 5489277  T
Q  113 gatgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacaga 212  Q
      |||||||||| |||| |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||||    
T  5489276 cttgatggcaacgcttcaacaccgtaatcttgtaaaacttcttggttgttctattcgacaagaagaaaagttgttgatctatgaattcatggccaacaga 5489177  T
Q  213 agcttggataactttatttttggtttgaactttcacaccaaccaaatttatttct 267  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  5489176 agcttggattactttatttttggtttgaactttctcaccaacgaaattaatttct 5489122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 5854926 - 5855188
Alignment:
Q  14 atattactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaag 113  Q
    ||||||||||||  ||||| ||||||||| ||||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||||||||||| |||    
T  5854926 atattactagggcgtaatgttagatggccgagagattgctgttaagaggctctctaaaacctcaggacaaggaaccgaggagttcaaaaatgaagtgaag 5855025  T
Q  114 atgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacagaa 213  Q
     |||||||||||||||  ||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||            
T  5855026 ttgatggcaacacttcagcacagaaatcttgtaaaacttcttggttgttctattcaccaagatgaaaagttgttgatctaccaattcatgcc-------- 5855117  T
Q  214 gcttggataactttatttttggtttgaactttcacaccaaccaaatttatttctctcaggtttactcttgccatgatgt 292  Q
            ||||||||||||||||||||||||||||||||||||| |||||  |||||| |||||||||||||| ||||    
T  5855118 -------gaactttatttttggtttgaactttcacaccaaccaaa-ttattgttctcagttttactcttgccataatgt 5855188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 28 - 285
Target Start/End: Original strand, 25810227 - 25810484
Alignment:
Q  28 taatgctagatggccaagagattgctgttaagaggctttctaaaacatcaagacaaggatccgaggagttcaaaaatgaagtaaagatgatggcaacact 127  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |||||||||||||    
T  25810227 taatggtagacggccaagagattgctgttaagaggctttctaaaacatcaggacaaggaactgaggagttcaaaaatgaagtaaagttgatggcaacact 25810326  T
Q  128 tcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacagaagcttggataacttt 227  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||    
T  25810327 tcaacaccgtaatcttgtaaaacttcttggttgttctattcaacaagatgaaaagatgttgatctaagaattcatgcccaacagaagcttggattacttt 25810426  T
Q  228 atttttggtttgaactttcacaccaaccaaatttatttctctcaggtttactcttgcc 285  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||| ||||||||    
T  25810427 atttttggtttgaactttcacaccaaccaaatttatttatctcaatttttctcttgcc 25810484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 23392826 - 23392984
Alignment:
Q  81 caaggatccgaggagttcaaaaatgaagtaaagatgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaa 180  Q
    |||||||  |||||||| |||||||||||   | |||| || | ||||| |||||||||||| || || ||||||||||| |  |||||  |||| ||||    
T  23392826 caaggattggaggagtttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattcataaagaggaaa 23392925  T
Q  181 agttgttgatctacgaattcatgcccaacagaagcttggataactttatttttggtttg 239  Q
     ||| ||||| || |||| ||||||||||| |||||| ||  |||| || |||||||||    
T  23392926 tgttattgatatatgaatacatgcccaacaaaagcttagactacttcatctttggtttg 23392984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 23285739 - 23285610
Alignment:
Q  81 caaggatccgaggagttcaaaaatgaagtaaagatgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaa 180  Q
    |||||||  |||||||| |||||||||||   | |||| |||| ||||| |||||||||||| || || ||||||||||| |  |||||   ||| ||||    
T  23285739 caaggattggaggagtttaaaaatgaagttgtgttgattgcaaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattcatagagaggaaa 23285640  T
Q  181 agttgttgatctacgaattcatgcccaaca 210  Q
     ||| ||||| || |||| |||||||||||    
T  23285639 tgttattgatatatgaatacatgcccaaca 23285610  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 23341845 - 23341769
Alignment:
Q  132 caccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaa 208  Q
    ||||||||||| || || ||||| ||||||| ||||||   ||| ||||| ||||||||||| |||| |||||||||    
T  23341845 caccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttgatctatgaatacatgcccaa 23341769  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 23385289 - 23385365
Alignment:
Q  132 caccgtaatctagtaaaacttcttggttgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaa 208  Q
    ||||||||||| || || ||||| ||||||| ||||||   ||| ||||| ||||||||||| |||| |||||||||    
T  23385289 caccgtaatcttgtgaagcttctcggttgttgtattcacagagaggaaaaattgttgatctatgaatacatgcccaa 23385365  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 14520293 - 14520216
Alignment:
Q  159 tgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacagaagcttggataactttatttttggt 236  Q
    ||||||||| ||  ||||||||||||| |  | |||||||||||||| |||| |||||||||| ||||| | ||||||    
T  14520293 tgttctattgaaggagatgaaaagttgcttgtatacgaattcatgccgaacaaaagcttggattactttttatttggt 14520216  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 31732684 - 31732753
Alignment:
Q  93 gagttcaaaaatgaagtaaagatgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgtt 162  Q
    ||||||| ||||||||||||| | || |||| ||||| |||||| ||||||||||| || || |||||||    
T  31732684 gagttcataaatgaagtaaagctaattgcaaaacttcaacaccgaaatctagtaaagctgctaggttgtt 31732753  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 31745585 - 31745654
Alignment:
Q  93 gagttcaaaaatgaagtaaagatgatggcaacacttcgacaccgtaatctagtaaaacttcttggttgtt 162  Q
    ||||||| ||||||||||||| | || |||| ||||| |||||| ||||||||||| || || |||||||    
T  31745585 gagttcataaatgaagtaaagctaattgcaaaacttcaacaccgaaatctagtaaagctgctaggttgtt 31745654  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 2691137 - 2691060
Alignment:
Q  159 tgttctattcaacaagatgaaaagttgttgatctacgaattcatgcccaacagaagcttggataactttatttttggt 236  Q
    ||||||||| ||  ||||||||||||| |  | |||||||||||||| |||| |||||||||| ||||| | ||||||    
T  2691137 tgttctattgaaggagatgaaaagttgcttgtatacgaattcatgccgaacaaaagcttggatcactttttatttggt 2691060  T

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