View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7696_low_8 (Length: 280)
Name: NF7696_low_8
Description: NF7696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7696_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 46890914 - 46891170
Alignment:
| Q |
6 |
tttggtgtttgtattgtgcatgatgtttcatgtttggtttgacataaacttgctcctcctacttgttgtctctttgccttgtcttgcataaatgtacctt |
105 |
Q |
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| T |
46890914 |
tttgttgtttgtattgtgcatgatgtttcatgtttggtttgacataaacttgctcctcctacttgttgtccctttgccttgtcttgcataaatgtacctt |
46891013 |
T |
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| Q |
106 |
cctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgt |
205 |
Q |
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| T |
46891014 |
cctaaggttctgaatgattccatcattgtttaatgatcacattatctccttgttatcaaatttctgccataaatgggctgtggcatggcggactttgtgc |
46891113 |
T |
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| Q |
206 |
tagttgccatagtctataccatgactattatacccggcttgtttccaccatatgccg |
262 |
Q |
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| T |
46891114 |
tagtggccatagtctataccatgactattatacccggcttgtttccaccatatgccg |
46891170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 46873629 - 46873710
Alignment:
| Q |
135 |
ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccata |
216 |
Q |
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| T |
46873629 |
ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggtggactttgtgctagttggcata |
46873710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 46899479 - 46899523
Alignment:
| Q |
31 |
tttcatgtttggtttgacataaacttgctcctcctacttgttgtc |
75 |
Q |
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| T |
46899479 |
tttcatggttggtttgacataaacttgtccctcctatttgttgtc |
46899523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 260
Target Start/End: Complemental strand, 48232215 - 48232093
Alignment:
| Q |
135 |
ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactatt |
234 |
Q |
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| T |
48232215 |
ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtc--taccatgactatt |
48232118 |
T |
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| Q |
235 |
atacccggcttgtttccaccatatgc |
260 |
Q |
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| T |
48232117 |
atacccggcttg-ttccaccatatgc |
48232093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 260
Target Start/End: Complemental strand, 48237255 - 48237133
Alignment:
| Q |
135 |
ttaatgatcacattatctccttgttatcacatttctgccataaatgggctgtggcatggcggactttgtgttagttgccatagtctataccatgactatt |
234 |
Q |
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| T |
48237255 |
ttaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtc--taccatgactatt |
48237158 |
T |
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| Q |
235 |
atacccggcttgtttccaccatatgc |
260 |
Q |
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| T |
48237157 |
atacccggcttg-ttccaccatatgc |
48237133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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