View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7697_high_2 (Length: 579)
Name: NF7697_high_2
Description: NF7697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7697_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 256 - 570
Target Start/End: Complemental strand, 45722514 - 45722200
Alignment:
| Q |
256 |
cttagtgtgttgcgggactaatgttgaacgtgcatagcatcaagattttggatgatggacaagagttgacaatattgacaattgatatgaattctttaat |
355 |
Q |
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| T |
45722514 |
cttagtgtgttgtgggactaatgttgaacgtgcatagcatcaagattttggatgatggacaagagttgacaatattgacaattgatatgaattctttaat |
45722415 |
T |
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| Q |
356 |
ggcttccacacgcatgtaggaataatttatttatatcaaaatagtaaagttgtactcactactagtagattaaaagcaaattatatttgaatattatgag |
455 |
Q |
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| T |
45722414 |
ggcttccacacgcatgtaggaataat----ttatatcaaaatagtgaagttgtactcactactagtagattaaaagcaaattatatttgaatattatgag |
45722319 |
T |
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| Q |
456 |
t-----aatggagatcacgttcatttagaatttttattaagagattgaaacttggagtcacgtactctttacatgagtcaacaaattcctcaaagttacg |
550 |
Q |
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| T |
45722318 |
taatggaatggagatcacgttcatttagaatttttattaagagattgaaacttggagtcacgtactc-ttacatgagtcaacaaattcctcaaagttacg |
45722220 |
T |
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| Q |
551 |
gaacatccttagatattctt |
570 |
Q |
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| T |
45722219 |
gaacatccttagatattctt |
45722200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 45722776 - 45722684
Alignment:
| Q |
20 |
gcacaaactattcaatttgaaacgtggtctaaccatgtctttgattaattgattctaaagcactcaagctcaaattatgtgtctatatatata |
112 |
Q |
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| T |
45722776 |
gcacaaactattcaacttgaaacgtggtctaaccatgtctttgattaattgattctaaagcactcaagctcaaattatgtgtctatatatata |
45722684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 45722653 - 45722575
Alignment:
| Q |
109 |
tatacatgcatttggggaacagaattgaagaagaaggccagcttcattgtgacactcacatcacaactcacacccttgactttggac |
195 |
Q |
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| T |
45722653 |
tatacatgcatttggggaacataattgaagaag---gccagcttcattgtgacact-----cacaactcacacccttgactttggac |
45722575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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