View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7697_low_1 (Length: 782)
Name: NF7697_low_1
Description: NF7697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7697_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 20 - 766
Target Start/End: Original strand, 30519690 - 30520436
Alignment:
| Q |
20 |
gacttgatgctgtcacaaatattgtcgttgtcgcggtggttcacaaatgcattagtatgtaatatcgtactttgatttacaatacgtcaaaaatttgcat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
30519690 |
gacttgatgctgtcacaaatattgtcgttgtcacggtggttcacaaatgcattagtatgcaatattgtactttgatttacaatacataaaaaatttgcat |
30519789 |
T |
|
| Q |
120 |
caaaacactccttgtgtccaaaattggaagcaacaactctgtgtagattttggtcttgtgtataccttgatgtatataattcattcagtatctccaaatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30519790 |
caaaacactccttgtgtccaaaattggaagcaaccattctgtgtagattttggttttgtgtataccttgatgtatataattcattcagtatctccaaacc |
30519889 |
T |
|
| Q |
220 |
actgaactactcattcgtgaactagtaaattgttgtttaccttgatcttgtatagggttacataattatatatatgcccttgtataaaactgcttgctaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30519890 |
actgaactactcattcgtgaactagtaaattgttgtttaccttgatattgtatagggttacataattatatatatgcccttgtataaaactgcttgctaa |
30519989 |
T |
|
| Q |
320 |
aatatgggtctagcataaggaccctcctagataaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30519990 |
aatatgggtctagcataaggaccctcctagctaaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtg |
30520089 |
T |
|
| Q |
420 |
agtgtgactggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30520090 |
agtgtgactggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtatgtcttttgaacctagtcaaa |
30520189 |
T |
|
| Q |
520 |
gtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaatgggtgaa |
619 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30520190 |
gtgaaagtgtaggtcatttctcaaagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaatgggtgaa |
30520289 |
T |
|
| Q |
620 |
agtaatctaaaattctattgaaaagtaagtacatattagccaattaacgatggttttagtcataatttgaattcaagctctctcaaacgatttttcttta |
719 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30520290 |
agtaatctaaaattcgattgaaaagtaagtatatattagccaattaacgatggttttagtcataatttgaattcaagctctctcaaacgatttttcttta |
30520389 |
T |
|
| Q |
720 |
attgaagctcattaacccagtctcggacacgcatcaatgtgcaacac |
766 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30520390 |
attgaagctcattaacccagtctcagacacgcatcaatgtgcaacac |
30520436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 269 - 633
Target Start/End: Original strand, 35633820 - 35634183
Alignment:
| Q |
269 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
368 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35633820 |
gtatagggttacataattatatatatgctcttgtataaaactgcttgctgaaatatgggtcaagcataaggaccctcctagctaaagccatttgaatcaa |
35633919 |
T |
|
| Q |
369 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
468 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35633920 |
agcaa-gtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagcaccttctttaat |
35634018 |
T |
|
| Q |
469 |
gttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaaagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaa |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35634019 |
gttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtcaaagcgaaagtgcaggtcatttct--aagaagattgatagataccaattcaa |
35634116 |
T |
|
| Q |
569 |
ttgccgta-attgtttttgttaaccttcaaattctcattgaaaat-gggtgaaagtaatctaaaatt |
633 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||| |||||||| |||| | |||||||||||||| |
|
|
| T |
35634117 |
atgccgtagtttttttttcttaaccttcaaattctcgttgaaaatggggtcatagtaatctaaaatt |
35634183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 269 - 633
Target Start/End: Complemental strand, 48755063 - 48754701
Alignment:
| Q |
269 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
368 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||||||| || |||||||||||||||||| |
|
|
| T |
48755063 |
gtatagggtaacataattatatatatgctcttgtataaaactgcttgccgaaatatgggccaagcataaggaccctcccagctaaagccatttgaatcaa |
48754964 |
T |
|
| Q |
369 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
468 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48754963 |
agcaa-gtgttgttatcgtactaaatagaaaatcattatgtctcatgtgtgagtgtgactcgaaagataagccaacccaatcacaagcaccttctttaat |
48754865 |
T |
|
| Q |
469 |
gttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaaagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaa |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48754864 |
gttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtcaaagcgaaagtgcaggtcatttct--aagaagattgatagataccaattcaa |
48754767 |
T |
|
| Q |
569 |
ttgccgtaattgtttttgttaaccttcaaattctcattgaaaat-gggtgaaagtaatctaaaatt |
633 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |||||||| |||| | |||||||||||||| |
|
|
| T |
48754766 |
atgccgtaattttttttcttaaccttcaaattctcgttgaaaatggggtcatagtaatctaaaatt |
48754701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 269 - 615
Target Start/End: Original strand, 42247350 - 42247691
Alignment:
| Q |
269 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
368 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42247350 |
gtatagggttacataattatatatatgctcttgtataaaactgcttgctgaaatatgggtcaagcataaggaccctcctagctaaagccatttgaatcaa |
42247449 |
T |
|
| Q |
369 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
468 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
42247450 |
agcaa-gtgatgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgaccggaaagataagccaacctaatcacaagcaccttctttaat |
42247548 |
T |
|
| Q |
469 |
gttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaaagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaa |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42247549 |
gttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtcaaagcgaaagtgcaggtcatttct--aagaagattgatagataccaattcaa |
42247646 |
T |
|
| Q |
569 |
ttgccgtaattgtttttgttaaccttcaaattctcattgaaaatggg |
615 |
Q |
| |
|
||| | || ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
42247647 |
atgcgtt--ttttttttcttaaccttcaaattctcgttgaaaatggg |
42247691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 269 - 633
Target Start/End: Original strand, 45384840 - 45385200
Alignment:
| Q |
269 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
368 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
45384840 |
gtatagggtaacataattatatatatgctcttgtaaaaaactgcttgctgaaatatgggtcaagcataaggacc-tcctagctaaagccatttgaatcaa |
45384938 |
T |
|
| Q |
369 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
468 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45384939 |
agcaa-gtgttgttatcgtactaaagagaaaatcattatgtctcat-tgtgagtgtgactcgaaagataagccaacccaatcacaagcaccttctttaat |
45385036 |
T |
|
| Q |
469 |
gttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaaagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaa |
568 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45385037 |
gttcatgttccacaaaaggcgaatattgtgtgtctattgaacctagtcaaagcgaaagtgcatgtcatttct--aagaagattgatagataccaattcaa |
45385134 |
T |
|
| Q |
569 |
ttgccgtaattgtttttgttaaccttcaaattctcattgaaaat-gggtgaaagtaatctaaaatt |
633 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||||| |||||||| |||| | |||||||||||||| |
|
|
| T |
45385135 |
ataccgtaattttttttcttaaccttcaaattctcgttgaaaatggggtcatagtaatctaaaatt |
45385200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University