View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7697_low_10 (Length: 247)

Name: NF7697_low_10
Description: NF7697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7697_low_10
NF7697_low_10
[»] chr5 (15 HSPs)
chr5 (1-232)||(41336787-41337018)
chr5 (2-230)||(41366040-41366268)
chr5 (2-232)||(41331858-41332088)
chr5 (2-230)||(31188783-31189011)
chr5 (2-230)||(41327847-41328075)
chr5 (50-230)||(41285948-41286131)
chr5 (2-230)||(41323949-41324177)
chr5 (2-229)||(31224803-31225030)
chr5 (16-230)||(31185277-31185491)
chr5 (6-157)||(41369506-41369657)
chr5 (2-230)||(41315880-41316108)
chr5 (9-230)||(41321930-41322151)
chr5 (29-230)||(41359702-41359895)
chr5 (6-230)||(31178742-31178963)
chr5 (134-223)||(41430820-41430909)
[»] chr4 (1 HSPs)
chr4 (8-230)||(17249477-17249699)
[»] chr3 (1 HSPs)
chr3 (54-86)||(22939696-22939728)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 41337018 - 41336787
Alignment:
Q  1 tttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337018 tttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatct 41336919  T
Q  101 ttcgtaattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41336918 ttcgtaattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaa 41336819  T
Q  201 tgtgatgtcatgtgttttcataatctcttttg 232  Q
    ||||||||||||||||||||||||||||||||    
T  41336818 tgtgatgtcatgtgttttcataatctcttttg 41336787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 41366268 - 41366040
Alignment:
Q  2 ttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctt 101  Q
    |||||| |||||||||||||||||  ||||||||||||||||| ||| | ||||| |||| ||||||||||||||||||||||||| |||||||||| ||    
T  41366268 ttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaatagctcttcaacacatatttt 41366169  T
Q  102 tcgtaattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaat 201  Q
    ||||||||| ||||||  |||||| | ||||||||| ||||||||  ||||||||||| |||||| | |||  |||||||  |||||||||||||| ||     
T  41366168 tcgtaattgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaag 41366069  T
Q  202 gtgatgtcatgtgttttcataatctcttt 230  Q
     |||| |||||||||||||||||||||||    
T  41366068 ttgatatcatgtgttttcataatctcttt 41366040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 41332088 - 41331858
Alignment:
Q  2 ttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctt 101  Q
    |||||| |||||||||||||||||  | ||| || |||||||||||| | ||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  41332088 ttgcagttattgatttaacaagatttgtcacttcatcttctcttatggacctaaatgattggacacgctttgcacttaatagctctataacacatatctt 41331989  T
Q  102 tcgtaattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaat 201  Q
    ||||| ||| |||||| |||| | |||||||| |||  |||||| | ||||||||||| |  ||| | | |  |||||||  ||||||||||||||||||    
T  41331988 tcgtacttgcctccaatgttcacagtatgtagcgaagacaatatttgtagcattgtaactccatattgttgacaaaagaaggtttggcctatcacaaaat 41331889  T
Q  202 gtgatgtcatgtgttttcataatctcttttg 232  Q
    || | ||||||||||||||||| ||||||||    
T  41331888 gtaaggtcatgtgttttcataacctcttttg 41331858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 31188783 - 31189011
Alignment:
Q  2 ttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctt 101  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||  | ||||| ||||||||||| |||||||||||||  | || ||||||||||||    
T  31188783 ttgcagatattgatttaacaagatttgacacctcttcttctcttatatacctaaacgattggacacgctttgcacttaataattgtaaaacacatatctt 31188882  T
Q  102 tcgtaattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaat 201  Q
    ||||| ||| |||||  ||||||| |||| ||||||   ||||||  ||||||||||| |||||| | | |  |||||||  ||||| |||||||||||     
T  31188883 tcgtagttgcctccagtgttctccatatggagagaagataatatcaatagcattgtaactaaatattgtggacaaaagaaggtttggtctatcacaaaag 31188982  T
Q  202 gtgatgtcatgtgttttcataatctcttt 230  Q
     ||| ||||||||||||||||||||||||    
T  31188983 ttgaggtcatgtgttttcataatctcttt 31189011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 41328075 - 41327847
Alignment:
Q  2 ttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctt 101  Q
    |||||| ||||||||||||||| |  |||||||| |||||||||||| | ||||| ||||| ||||| ||||||||||||||||||| ||||||||||||    
T  41328075 ttgcagttattgatttaacaaggtttgacacctcatcttctcttatggacctaaatgattgtacacgctttgcacttaatagctctataacacatatctt 41327976  T
Q  102 tcgtaattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaat 201  Q
    ||||||||| |||||| |||| ||||||| || ||| ||||| ||| ||||||||||| || |||   | |  |||||||  |||||||| || || ||     
T  41327975 tcgtaattgcctccaatgttcaccgtatgcagcgaaggcaatgtctgtagcattgtaactatatatattggacaaaagaaggtttggcctgtcgcagaag 41327876  T
Q  202 gtgatgtcatgtgttttcataatctcttt 230  Q
     |||  |||||||||||||||||||||||    
T  41327875 ttgagatcatgtgttttcataatctcttt 41327847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 230
Target Start/End: Complemental strand, 41286131 - 41285948
Alignment:
Q  50 aactaaaagattggacacgttttgcacttaatagctctacaacacatatctttcgtaattgtctccaaagttctcc--gtatg-tagagaaagcaatatc 146  Q
    ||||||| ||||| ||||| ||||||||||||||||||| |||||||| |||||| | |||||||||  |||||||  ||||  ||||||| ||||||||    
T  41286131 aactaaatgattgaacacgctttgcacttaatagctctataacacatagctttcgcagttgtctccagtgttctccatgtataatagagaatgcaatatc 41286032  T
Q  147 tctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaatgtgatgtcatgtgttttcataatctcttt 230  Q
    | ||  ||||||||||| || | | || |||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  41286031 tgtattattgtaagtaagtattgtgggcaaaagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctcttt 41285948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 41324177 - 41323949
Alignment:
Q  2 ttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctt 101  Q
    |||||| ||||||| || ||||||  || || || ||||||||| || | ||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  41324177 ttgcagttattgatgtagcaagatttgatacttcatcttctcttgtggacctaaatgattggacacgctttgcacttaatagctctacaacacatatctt 41324078  T
Q  102 tcgtaattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaat 201  Q
    ||||| ||| |||||  ||||||| ||| |||||||   || |||  ||||||||||||| |||| | | |  |||||||  ||||||||||||| |||     
T  41324077 tcgtagttgcctccaccgttctccatatttagagaatataacatcagtagcattgtaagttaatattgtggccaaaagaaggtttggcctatcactaaag 41323978  T
Q  202 gtgatgtcatgtgttttcataatctcttt 230  Q
    || | ||||||||||||||||||||||||    
T  41323977 gtaaggtcatgtgttttcataatctcttt 41323949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 31225030 - 31224803
Alignment:
Q  2 ttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctt 101  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||  | ||||| ||||||||||| |||||||||||||  | || ||||||||||||    
T  31225030 ttgcagatattgattcaacaagatttgacacctcttcttctcttatatacctaaatgattggacacgctttgcacttaataattgtaaaacacatatctt 31224931  T
Q  102 tcgtaattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaat 201  Q
    ||||| ||| |||||  ||||||| |||| ||||||| |||||    ||||||||||| |||||| | | |  |||||||  ||||  || ||||||||     
T  31224930 tcgtatttgcctccagtgttctccatatgcagagaaaacaatactagtagcattgtaactaaatattgtggacaaaagaaggtttgctctgtcacaaaag 31224831  T
Q  202 gtgatgtcatgtgttttcataatctctt 229  Q
     ||| ||| | |||||||||||||||||    
T  31224830 ttgaggtcgtttgttttcataatctctt 31224803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 31185277 - 31185491
Alignment:
Q  16 ttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctttcgtaattgtctcc 115  Q
    ||||||||||  ||||||||||||||||||||  | ||||| |||| |||||| |||||||||||||  | || |  |||||||||||| | ||| ||||    
T  31185277 ttaacaagatttgacacctcttcttctcttatatacctaaatgattagacacgctttgcacttaataattgtaaagtacatatctttcgcagttgcctcc 31185376  T
Q  116 aaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaatgtgatgtcatgtgt 215  Q
    || ||||| | |||||||||||||||||| |  |||| |||||| |||||| | | |  |||||||  ||||| |||||||||||  ||| |||||||||    
T  31185377 aatgttcttcatatgtagagaaagcaataccagtagcgttgtaactaaatattgtggacaaaagaaagtttggtctatcacaaaagttgaggtcatgtgt 31185476  T
Q  216 tttcataatctcttt 230  Q
    |||||||||||||||    
T  31185477 tttcataatctcttt 31185491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 41369657 - 41369506
Alignment:
Q  6 agatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctttcgt 105  Q
    ||||||||||||||| ||    || |||||||||||||||||| | ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  41369657 agatattgatttaactagtgatgaaacctcttcttctcttatggacctaaatgattggacacgctttgcatttaatagctctacaacacatatctttcgt 41369558  T
Q  106 aattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgt 157  Q
    | ||| |||||| ||||||| |||   ||||| | ||||||| |||||||||    
T  41369557 agttgcctccaatgttctccatattctgagaaggaaatatctttagcattgt 41369506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 41316108 - 41315880
Alignment:
Q  2 ttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctt 101  Q
    |||||| |||||||||||||||||  | ||| || |||||||||||  | ||||| ||||||||||| ||||| |||||||| |||| ||||||||||||    
T  41316108 ttgcagttattgatttaacaagatttgtcacttcatcttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataacacatatctt 41316009  T
Q  102 tcgtaattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaat 201  Q
    ||||| ||| |||||  ||||||| ||| | |||||   || |||  ||||||||||| |  ||| | |||  |||||||  ||||||||| ||| |||     
T  41316008 tcgtagttgcctccaccgttctccatatatcgagaatataacatcagtagcattgtaactccatattgtagacaaaagaaggtttggcctaccactaaag 41315909  T
Q  202 gtgatgtcatgtgttttcataatctcttt 230  Q
     |||  |||||||||||||||||||||||    
T  41315908 ttgagatcatgtgttttcataatctcttt 41315880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 41322151 - 41321930
Alignment:
Q  9 tattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctttcgtaat 108  Q
    |||||||||||||||||  | ||| || |||||||||||  | ||||| |||||||  || |||||||||||||| |||| ||| ||||||||||||| |    
T  41322151 tattgatttaacaagatttgtcacttcatcttctcttatagacctaaatgattggatgcgctttgcacttaatagttctataacgcatatctttcgtagt 41322052  T
Q  109 tgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaatgtgatgt 208  Q
    |  |||||   |||||  ||  | || ||   || |||  ||||||||||| |||||| | |||  |||||||  |||||||||||||||||  |||  |    
T  41322051 tccctccaccattctcgatacatcgaaaatataacatcagtagcattgtaactaaatattgtagacaaaagaaggtttggcctatcacaaaagttgagat 41321952  T
Q  209 catgtgttttcataatctcttt 230  Q
    ||||||||||||||||||||||    
T  41321951 catgtgttttcataatctcttt 41321930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 41359895 - 41359702
Alignment:
Q  29 acacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctttcgtaattgtctccaaagttctccgta 128  Q
    |||| ||||||||||||||| | ||||| |||||||||| |||| ||||||||||||||  |||||| | |||||| | |||||||||  ||||||| ||    
T  41359895 acacatcttcttctcttatggacctaaatgattggacacatttt-cacttaatagctctgtaacacacaactttcggagttgtctccagtgttctccata 41359797  T
Q  129 tgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaatgtgatgtcatgtgttttcataatctct 228  Q
    |       | ||||||||| ||  ||||||||||| || | | |  |||||||  |||||||| |||| ||| || | ||||||||||||||||||||||    
T  41359796 t-------atgcaatatctgtattattgtaagtaagtattgtggccaaaagaaggtttggcctgtcaccaaaggtaaggtcatgtgttttcataatctct 41359704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 31178742 - 31178963
Alignment:
Q  6 agatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctttcgt 105  Q
    |||||| ||||||| |||||  |||||||||| |||||||||  | ||||| ||||||||| | |||||||||||||  | || |  ||||||||||||     
T  31178742 agatatcgatttaataagatttgacacctcttattctcttatatacctaaatgattggacatgctttgcacttaataattgtaaagtacatatctttcgc 31178841  T
Q  106 aattgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaatgtga 205  Q
    | ||| |||||  ||||||| |||| |||||| ||||||||  |||| ||||||  |||      ||  |||||||  || || |||||||||||  |||    
T  31178842 agttgcctccagtgttctccatatggagagaaggcaatatcagtagcgttgtaaccaaa---agaagacaaaagaaggttcggtctatcacaaaagttga 31178938  T
Q  206 tgtcatgtgttttcataatctcttt 230  Q
     ||||||||||||||||||||||||    
T  31178939 ggtcatgtgttttcataatctcttt 31178963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 41430909 - 41430820
Alignment:
Q  134 agaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaatgtgatgtcatgtgttttcataa 223  Q
    |||| ||||||| | || ||||||||||||||| | |||  |||||||  |||||||||||||||||  | | ||| |||||||||||||    
T  41430909 agaatgcaatatttgtatcattgtaagtaaatattgtagacaaaagaaggtttggcctatcacaaaagtttaagtcttgtgttttcataa 41430820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 17249477 - 17249699
Alignment:
Q  8 atattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaacacatatctttcgtaa 107  Q
    |||||||||||||||||||  |||| |||||||||||||   | ||||| ||||||||||||||  ||||||| || | | |||| ||||||||||| |     
T  17249477 atattgatttaacaagatctaacacttcttcttctcttaccgatctaaacgattggacacgtttaacacttaaaagttgttcaacgcatatctttcgcag 17249576  T
Q  108 ttgtctccaaagttctccgtatgtagagaaagcaatatctctagcattgtaagtaaatactctaggtaaaagaacatttggcctatcacaaaatgtgatg 207  Q
    |||  ||||  ||||||| |||||||||||  |||||||   ||||||||||||||||| | | |  |||||||  || |||||||||||||| || | |    
T  17249577 ttgcttccagtgttctccatatgtagagaatacaatatcagaagcattgtaagtaaatattgtggacaaaagaaggttaggcctatcacaaaaggtaagg 17249676  T
Q  208 tcatgtgttttcataatctcttt 230  Q
    |||||||||||||||||||||||    
T  17249677 tcatgtgttttcataatctcttt 17249699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 22939728 - 22939696
Alignment:
Q  54 aaaagattggacacgttttgcacttaatagctc 86  Q
    |||||||||||||||||||| ||||||||||||    
T  22939728 aaaagattggacacgttttgaacttaatagctc 22939696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University