View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7697_low_11 (Length: 245)

Name: NF7697_low_11
Description: NF7697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7697_low_11
NF7697_low_11
[»] chr8 (6 HSPs)
chr8 (11-222)||(25319255-25319467)
chr8 (21-222)||(35779961-35780165)
chr8 (170-218)||(1330922-1330970)
chr8 (135-222)||(23446807-23446894)
chr8 (169-220)||(26844761-26844813)
chr8 (137-222)||(30654135-30654220)
[»] chr1 (4 HSPs)
chr1 (21-222)||(13113782-13113986)
chr1 (101-222)||(6607477-6607599)
chr1 (135-221)||(32446617-32446703)
chr1 (39-86)||(32446515-32446562)
[»] chr6 (2 HSPs)
chr6 (22-221)||(17797910-17798111)
chr6 (130-219)||(13545583-13545672)
[»] chr3 (4 HSPs)
chr3 (21-222)||(22937734-22937938)
chr3 (21-221)||(1233965-1234167)
chr3 (133-221)||(26045220-26045308)
chr3 (130-221)||(47771759-47771849)
[»] chr7 (5 HSPs)
chr7 (130-222)||(16361675-16361767)
chr7 (130-222)||(7635744-7635836)
chr7 (156-222)||(27300776-27300842)
chr7 (130-214)||(25988786-25988870)
chr7 (156-221)||(44185958-44186023)
[»] chr4 (5 HSPs)
chr4 (21-222)||(2824092-2824297)
chr4 (21-87)||(43041476-43041542)
chr4 (144-222)||(43046355-43046433)
chr4 (130-222)||(47246423-47246514)
chr4 (130-222)||(22024907-22024999)
[»] chr2 (4 HSPs)
chr2 (156-222)||(2468719-2468785)
chr2 (135-222)||(4277463-4277550)
chr2 (174-222)||(15348567-15348615)
chr2 (181-222)||(5094976-5095017)
[»] chr5 (3 HSPs)
chr5 (155-222)||(31806074-31806141)
chr5 (38-86)||(31805955-31806002)
chr5 (156-221)||(8009170-8009235)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 25319467 - 25319255
Alignment:
Q  11 cgaagaatatttcatttagttacagttattatgactggtgtactcgtccgctcctttgtatgagagtgcatcagtagnnnnnnnnnnnnngttgacggtg 110  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||             ||||||||||    
T  25319467 cgaagagtatttcatttagttacagttataatgactggtgtactcgtccgctcctttgtatgggagtgcatcagtagtttcttgttttttgttgacggtg 25319368  T
Q  111 tcggttcttttg-caccgaattgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctca 209  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25319367 tcggttcttttggcaccgaattgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatacgcatttttaatatatctca 25319268  T
Q  210 ttttagcttgtgc 222  Q
    |||||||||||||    
T  25319267 ttttagcttgtgc 25319255  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 35780165 - 35779961
Alignment:
Q  21 ttcatttagttacagttattatgactggtgtactcgtccgctcctttgtatgagagtgcatcagtagnnnnnnnnnnnnn--gttgacggtgtcggttct 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||               |||||||||||||||||     
T  35780165 ttcatttagttacagttattatgactgatgtactcgtccgctcctttgtatgggagtgcatcagtagttttttgttatttttgttgacggtgtcggttcc 35780066  T
Q  119 tttg-caccgaattgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagct 217  Q
    |||| |||||  ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35780065 tttggcaccgggttgtttgtaaatacttagcggtgtcgcactctttgcacatcttgtgcagggtgtttcatgcgcaattttaatatatctcattttagct 35779966  T
Q  218 tgtgc 222  Q
    |||||    
T  35779965 tgtgc 35779961  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 1330922 - 1330970
Alignment:
Q  170 cttgtgcagggtgtttcatgcgcatttttaatatatctcattttagctt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1330922 cttgtgcagggtgtttcatgcgcatttttaatatatctcattttagctt 1330970  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 23446894 - 23446807
Alignment:
Q  135 tgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    ||||||||||||||  ||   |||| ||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  23446894 tgtaaatatttagcaatgactcactttttgcacgtcttgtgcaggatgtttcatgtgcagttttaatatatctcattttagcttgtgc 23446807  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 26844761 - 26844813
Alignment:
Q  169 tcttgtgcagggtgtttcatgcgca-tttttaatatatctcattttagcttgt 220  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  26844761 tcttgtgcagggtgtttcattcgcaatttttaatttatctcattttagcttgt 26844813  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 30654135 - 30654220
Alignment:
Q  137 taaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    |||||||||||| ||||  | || |||| || |||||||||||||| | |||  ||| ||||||||||||||||||||| ||||||    
T  30654135 taaatatttagcagtgtatcgctttttgtacgtcttgtgcagggtgatacatatgcagttttaatatatctcattttagtttgtgc 30654220  T

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Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 13113782 - 13113986
Alignment:
Q  21 ttcatttagttacagttattatgactggtgtactcgtccgctcctttgtatgagagtgcatcagtagnnnnnnnnnnnnn--gttgacggtgtcggttct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||               ||||||||||||||||||    
T  13113782 ttcatttagttacagttattatgactggtgtactcgtccgctcctttatatgggagtgcatcagtagttttttgttatttttgttgacggtgtcggttct 13113881  T
Q  119 tttg-caccgaattgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagct 217  Q
    |||| ||||| |||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13113882 tttggcaccggattgtttgtaaattcttagcggtgtcgcactctttgcatatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagct 13113981  T
Q  218 tgtgc 222  Q
    |||||    
T  13113982 tgtgc 13113986  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 6607599 - 6607477
Alignment:
Q  101 gttgacggtgtcggttcttttg-caccgaattgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcattttta 199  Q
    |||||||||||||||||||||| |||||  ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  6607599 gttgacggtgtcggttcttttggcaccgggttgtttgtaaatacttagcggagtcgcactctttgcacatcttgtgcagggtgtttcatgcgcaatttta 6607500  T
Q  200 atatatctcattttagcttgtgc 222  Q
    |||||||||||||||||||||||    
T  6607499 atatatctcattttagcttgtgc 6607477  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 32446617 - 32446703
Alignment:
Q  135 tgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtg 221  Q
    ||||||||||||||  ||   |||| ||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  32446617 tgtaaatatttagcaatgactcactttttgcacgtcttgtgcagggtatttcatgtgcaattttaatatatctcattttagcttgtg 32446703  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 32446515 - 32446562
Alignment:
Q  39 ttatgactggtgtactcgtccgctcctttgtatgagagtgcatcagta 86  Q
    |||||||||||| || | |||||||||||||||| |||||||||||||    
T  32446515 ttatgactggtggacacatccgctcctttgtatgggagtgcatcagta 32446562  T

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Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 17798111 - 17797910
Alignment:
Q  22 tcatttagttacagttattatgactggtgtactcgtccgctcctttgtatgagagtgcatcagtagnnnnnnnnnnnnn-gttgacggtgtcggttcttt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||              ||||||||||||| |||||     
T  17798111 tcatttagttacagttattatgactggtgtactcgtccgctcctttgtatgggagtgcatcagtagttttttgtttttttgttgacggtgtcgattcttc 17798012  T
Q  121 tg-caccgaattgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttg 219  Q
    || ||||| |||||||  ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17798011 tggcaccggattgtttacaaatacttagcggtgtcgcactctttgcacatcttatgcagggtgtttcatgcgcatttttaatatatctcattttagcttg 17797912  T
Q  220 tg 221  Q
    ||    
T  17797911 tg 17797910  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 13545583 - 13545672
Alignment:
Q  130 ttgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttg 219  Q
    |||| |||||||||||||||| ||  |||| ||| || |||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  13545583 ttgtctgtaaatatttagcggcgtctcactttttacatatcttgtgcagggtgtttcatctgcattattaatatatctcattttagcttg 13545672  T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 22937734 - 22937938
Alignment:
Q  21 ttcatttagttacagttattatgactggtgtactcgtccgctcctttgtatgagagtgcatcagtagnnnnnnnnnnnnn--gttgacggtgtcggttct 118  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||               ||||||||||||||| ||    
T  22937734 ttcatttaattacagttattatgactggtgtattcgtccgctcctttggatgggagtgcatcagtagttttttgttatttttgttgacggtgtcggtcct 22937833  T
Q  119 tttg-caccgaattgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagct 217  Q
    |||| || ||  ||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  22937834 tttggcatcgggttgtttgtaaatacttaacggtgtcgcactctttgcacatcttatgcagggtgtttcattcgcaattttaatatatctcattttagct 22937933  T
Q  218 tgtgc 222  Q
    |||||    
T  22937934 tgtgc 22937938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 1233965 - 1234167
Alignment:
Q  21 ttcatttagttacagttattatgactggtgtactcgtccgctcctttgtatgagagtgcatcagtagnnnnnnnnnnnnn--gttgacggtgtcggttct 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||| || ||                ||||||||||||||  ||    
T  1233965 ttcatttaattacagttattatgactggtgtactcgtccgctcctttgtatggaagtgca-caataattttttgttatttttgttgacggtgtcggccct 1234063  T
Q  119 tttg-caccgaattgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagct 217  Q
    |||| ||||   ||||||||||||| ||||| |||| |||||||||||||||||| |||| |||||||||| || | | |||||||||||||||||||||    
T  1234064 tttgacaccaggttgtttgtaaatacttagcagtgttgcactctttgcacatcttatgcaaggtgtttcattcgtaatattaatatatctcattttagct 1234163  T
Q  218 tgtg 221  Q
    ||||    
T  1234164 tgtg 1234167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 26045308 - 26045220
Alignment:
Q  133 tttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtg 221  Q
    ||||||||||||||||  ||   |||| ||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  26045308 tttgtaaatatttagcaatgattcactttttgcacgtcttgtgcagggtgttttatgtgcagttttaatatatctcattttagcttgtg 26045220  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 47771849 - 47771759
Alignment:
Q  130 ttgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtg 221  Q
    |||| |||||||||||||| ||||  |||| ||||||| |||||||||| |||||||||  ||||| ||||||||||| |||||||||||||    
T  47771849 ttgtctgtaaatatttagccgtgtctcactttttgcacgtcttgtgcagagtgtttcatttgcattattaatatatct-attttagcttgtg 47771759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 16361675 - 16361767
Alignment:
Q  130 ttgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| |||||||    
T  16361675 ttgtttgtaaatacttagcggtgtcgcactctttgcacatcttgtgcagggtgtttcattcgcaatattaatatatgtcattttaacttgtgc 16361767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 7635744 - 7635836
Alignment:
Q  130 ttgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    |||| |||||||||||||||||||  |||| ||||||| ||||||||||| ||||||||  ||||| ||| ||||||||||||||||||||||    
T  7635744 ttgtctgtaaatatttagcggtgtctcactttttgcacgtcttgtgcaggatgtttcatttgcattattattatatctcattttagcttgtgc 7635836  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 27300776 - 27300842
Alignment:
Q  156 cactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    |||| ||||||  ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  27300776 cactttttgcatgtcttgtggagggtgtttcatgtgcagttttaatatatctcattttagcttgtgc 27300842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 25988786 - 25988870
Alignment:
Q  130 ttgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcatttta 214  Q
    |||| |||||||| || |||||||  |||| |||||||||||||| ||||||||||||| |||| | ||||||||| ||||||||    
T  25988786 ttgtctgtaaatactttgcggtgtctcactttttgcacatcttgtacagggtgtttcatccgcaatattaatatatttcatttta 25988870  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 44185958 - 44186023
Alignment:
Q  156 cactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtg 221  Q
    ||||||||||||| |||||||||||||| |  |  ||||| |||||||||||||||||||||||||    
T  44185958 cactctttgcacaccttgtgcagggtgtattgtcggcattattaatatatctcattttagcttgtg 44186023  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 2824092 - 2824297
Alignment:
Q  21 ttcatttagttacagttattatgactggtgtactcgtccgctcctttgtatgagagtgcatcagtagnnnnnnnnnnnnngt---tgacggtgtcggttc 117  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||               |   ||||||||||||  |    
T  2824092 ttcatttaattacagttattatgactggtgtactcgtccgcttctttgtatgggagtgcatccgtaattttttgttatttttgattgacggtgtcggccc 2824191  T
Q  118 ttttg-caccgaattgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagc 216  Q
    ||||| ||||   ||||||||||||| |||| |||||  |||||||||||||||||||||| |||||||||| |||| | |||||||||||||||||| |    
T  2824192 ttttggcaccaggttgtttgtaaatacttagtggtgtcccactctttgcacatcttgtgcatggtgtttcattcgcaatattaatatatctcattttaac 2824291  T
Q  217 ttgtgc 222  Q
    ||||||    
T  2824292 ttgtgc 2824297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 43041476 - 43041542
Alignment:
Q  21 ttcatttagttacagttattatgactggtgtactcgtccgctcctttgtatgagagtgcatcagtag 87  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43041476 ttcacttagttacagttattatgactggtgtactcgtccgctcctttgtatgggagtgcatcagtag 43041542  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 43046355 - 43046433
Alignment:
Q  144 ttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    |||| ||||| |||||||||||| ||||| ||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  43046355 ttagtggtgttgcactctttgcatatcttttgccggatgtttcatgcgcaattttaatatatctcattttagcttgtgc 43046433  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 47246514 - 47246423
Alignment:
Q  130 ttgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    ||||||||||||| |||||||| | | ||||||||||||||||||||| |||| ||||| |||| | ||| |||||||||||||| |||||||    
T  47246514 ttgtttgtaaatacttagcggtatcgtactctttgcacatcttgtgcatggtg-ttcattcgcaatattattatatctcattttaacttgtgc 47246423  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 22024907 - 22024999
Alignment:
Q  130 ttgtttgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    |||| ||||||||||| |||||||  | || ||||||  |||| ||  |||||||||||  ||||| ||||||||| |||||||| |||||||    
T  22024907 ttgtctgtaaatattttgcggtgtctcgctttttgcaagtcttatgttgggtgtttcatctgcattattaatatatttcattttaacttgtgc 22024999  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 2468719 - 2468785
Alignment:
Q  156 cactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    |||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||    
T  2468719 cactttttgcacatcttgtgcagggtgtttcatccgcaatattaatatatctcattttagcttgtgc 2468785  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 4277463 - 4277550
Alignment:
Q  135 tgtaaatatttagcggtgtggcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    ||||||||||||||  ||   |||| ||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  4277463 tgtaaatatttagcaatgactcactttttgcacgtcttgtgcagggtgtttcatgtgcagttttaatatatcttattttagcttgtgc 4277550  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 15348615 - 15348567
Alignment:
Q  174 tgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  15348615 tgcagggtgtttcatgtgcagttttaatatatctcattttagcttgtgc 15348567  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 5095017 - 5094976
Alignment:
Q  181 tgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  5095017 tgtttcatgcgcatttttaatatatttcattttagcttgtgc 5094976  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 31806074 - 31806141
Alignment:
Q  155 gcactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtgc 222  Q
    |||||||||| ||||||||| || |||||||||| | || ||||||||||| |||||||| |||||||    
T  31806074 gcactctttgtacatcttgtacaaggtgtttcatccacaattttaatatatttcattttaacttgtgc 31806141  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 31805955 - 31806002
Alignment:
Q  38 attatgactggtgtactcgtccgctcctttgtatgagagtgcatcagta 86  Q
    ||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  31805955 attatgactcgtgtactcgtccgct-ctttgtatgggagtgcatcagta 31806002  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 8009170 - 8009235
Alignment:
Q  156 cactctttgcacatcttgtgcagggtgtttcatgcgcatttttaatatatctcattttagcttgtg 221  Q
    |||||| |||||| |||||||||||||| |  |  || || |||||||||||||||||||||||||    
T  8009170 cactctgtgcacaccttgtgcagggtgtattgtcggcgttattaatatatctcattttagcttgtg 8009235  T

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