View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7697_low_2 (Length: 673)
Name: NF7697_low_2
Description: NF7697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7697_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 5 - 494
Target Start/End: Complemental strand, 22204289 - 22203775
Alignment:
| Q |
5 |
atgtcgaagaatatgctacgaaaacctgcaaaacaaaaacaatgagataatataagatgtcttgatagccaacgattttcgcatatagaatgctaactcc |
104 |
Q |
| |
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||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22204289 |
atgtcgatgaaaatgctacgaaaacccgcaaaacaaaaacaatgagataatataagatgtcttgatagccaacgattttcgcatatagaatgctaactcc |
22204190 |
T |
|
| Q |
105 |
agatttaa---atcctcaaagaatataatgtaccaggaagtgtacgcaacaaataattgaaacgtgggagtatacacgtaaaaaattcagcttcttcgaa |
201 |
Q |
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| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22204189 |
atatttaaccaatcctcaaagaatataatgtaccaggaagtgtacgcaacaaataattgaaacgtgggagtatacacgtaaaaaattcagcttctttgaa |
22204090 |
T |
|
| Q |
202 |
acccactcattgataacataaatatagggatatttgttaaacaacacgtttgagaagcactcaagtaatgcaaaaattatgccatcttattcttttgaag |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| |||||||| |
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| T |
22204089 |
acccactcattgataacataaatatagggatatttgttaaacaacacgtttgagaagcagtcaagtaatgcaaaaactatgccaacttattgttttgaag |
22203990 |
T |
|
| Q |
302 |
gatagctatatgaaaaactgcacatatactttgatgactcggagagattaaaggattgattt----------------------tttgttagcatagaac |
379 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||||||||||| |
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| T |
22203989 |
gatagctatatgaaaaactgcacatatactttgatgactcagagagattaaaggaatggttttttttggtagtgaaaggaatggtttgttagcatagaac |
22203890 |
T |
|
| Q |
380 |
cggtcaaataaaaataacttgtatgagaattctaataataaaaactttacaattcataattatgattttcaacttaatatttttcacttaaagtatggaa |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22203889 |
cggtcaaataaaaataacttgtatgagaattctaataataaaaactttacaattcataattatgattttccacttaatatttttcacttaaagtatggaa |
22203790 |
T |
|
| Q |
480 |
tataataataaattt |
494 |
Q |
| |
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|||||||||| |||| |
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| T |
22203789 |
tataataatatattt |
22203775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 22230450 - 22230752
Alignment:
| Q |
5 |
atgtcgaagaatatgctacgaaaacctgcaaaacaaaaacaatgagataatataagatgtcttgatagccaacgattttcgcatatagaatgctaactcc |
104 |
Q |
| |
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||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22230450 |
atgtcgatgaaaatgctacgaaaacccgcaaaacaaaaacaatgagataatataagatgtcttgatagccaacgattttcgcatatagaatgctaactcc |
22230549 |
T |
|
| Q |
105 |
agatttaa---atcctcaaagaatataatgtaccaggaagtgtacgcaacaaataattgaaacgtgggagtatacacgtaaaaaattcagcttcttcgaa |
201 |
Q |
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| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22230550 |
atatttaaccaatcctcaaagaatataatgtaccaggaagtgtacgcaacaaataattgaaacgtgggagtatacacgtaaaaaattcagcttctttgaa |
22230649 |
T |
|
| Q |
202 |
acccactcattgataacataaatatagggatatttgttaaacaacacgtttgagaagcactcaagtaatgcaaaaattatgccatcttattcttttgaag |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| ||||||| |
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| T |
22230650 |
acccactcattgataacataaatatagggatatttgttaaacaacacgtttgagaagcagtcaagtaatgcaaaaactatgccaacttatt-gtttgaag |
22230748 |
T |
|
| Q |
302 |
gata |
305 |
Q |
| |
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|||| |
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|
| T |
22230749 |
gata |
22230752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 231 - 494
Target Start/End: Complemental strand, 22250855 - 22250596
Alignment:
| Q |
231 |
atatttgttaaacaacacgtttgagaagcactcaagtaatgcaaaaattatgccatcttattcttttgaaggatagctatatgaaaaactgcacatatac |
330 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| || |||| ||||||| || ||| |||| |||||||||||||||||||||||||||||| | |
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| T |
22250855 |
atatttgttaaacaacacgtttgagaaagagtcaagtagtgataaaagtatgccaactcatttttttaaaggatagctatatgaaaaactgcacatatgc |
22250756 |
T |
|
| Q |
331 |
tttgatgactcggagagattaaaggattgattttttgttagcatagaaccggtcaaataaaaataacttgtatgagaattctaataataaaaactttaca |
430 |
Q |
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||||||||||| |||||||| |||| || ||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||| ||| | |
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| T |
22250755 |
tttgatgactcatagagattataggaatggttt---gttagaatagaaccggtcaaataaatataacttaactgagaattctaataacaaaaacattata |
22250659 |
T |
|
| Q |
431 |
attcataattatgattttcaacttaatatttttcacttaaagtatggaatataataataaattt |
494 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||||| |||| |
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| T |
22250658 |
attcataattatgattttcaactaaatatttctcacttaaa-taaggaatataataatatattt |
22250596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 22068278 - 22068243
Alignment:
| Q |
18 |
tgctacgaaaacctgcaaaacaaaaacaatgagata |
53 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
22068278 |
tgctacgaagacctgcaaaacaaaaacaatgagata |
22068243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 21144113 - 21144154
Alignment:
| Q |
12 |
agaatatgctacgaaaacctgcaaaacaaaaacaatgagata |
53 |
Q |
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|||| |||||||||| |||||||||||||||||| ||||||| |
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| T |
21144113 |
agaaaatgctacgaagacctgcaaaacaaaaacagtgagata |
21144154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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