View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7697_low_4 (Length: 558)
Name: NF7697_low_4
Description: NF7697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7697_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 5396919 - 5396587
Alignment:
| Q |
1 |
cgcaaactttcaagccaaccctaaaaggacagtccaagtgggttgcgttggactaaatcttaaatagaaagatttgaattggaaaaaatcgctcacatgg |
100 |
Q |
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| T |
5396919 |
cgcaaattttcaagccaacgctaaaaggccagtccaagtgggttgcgtcggaccaaatcttaaatagaaagatttgaattggaaaaaatcactcacatgg |
5396820 |
T |
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| Q |
101 |
ccaaagcttgtgtaaggaaaactcaacaaaaacacatcaaannnnnnnatgattaaccaagtaactaactaactattgaagtgcaagagttttctcctct |
200 |
Q |
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| T |
5396819 |
ccaaagcttgtgtaaggaaaactcaacaaaaacacatcaaatttttttctgattaactaagtaactaaata----ttgaagtgcaagagttttcttctct |
5396724 |
T |
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| Q |
201 |
catgaaataggttcaacattacaaccaaggaagaaagcaacaccaaccaccttccaaattcgagaacaaaaacttatactatgaatgtcttcactcgttt |
300 |
Q |
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| T |
5396723 |
catgaaataggttcaacattacaaccaaggaagaaagcaacaccaaccaccttccaaattcgagaacaaaaacttatactatgaatgtcttcactcgttt |
5396624 |
T |
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| Q |
301 |
ggaaacaaacatatcaaacatctacctatctaactca |
337 |
Q |
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| T |
5396623 |
ggaaacaaacatatcaaacatctacctatctaactca |
5396587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 482 - 550
Target Start/End: Complemental strand, 5396442 - 5396374
Alignment:
| Q |
482 |
tcgtaggacccaattgctcctataattattaaactctaataagtagtaaccatttcattatattcttcg |
550 |
Q |
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| T |
5396442 |
tcgtaggacccaattgctcctataattattaaactctaataagtagtaaccatttcattatattgttcg |
5396374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 5396537 - 5396480
Alignment:
| Q |
387 |
tattaccatatccacatcccatccttccaaaccataataatacactcactcatatgtt |
444 |
Q |
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| T |
5396537 |
tattaccatatccacatcccatccttccaaaccataataatacactcactcatatgtt |
5396480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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