View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7697_low_6 (Length: 343)
Name: NF7697_low_6
Description: NF7697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7697_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 54 - 334
Target Start/End: Complemental strand, 38947025 - 38946745
Alignment:
| Q |
54 |
aatcaacgtacaatttgcattgaaggacataataaaatcgaaattacacattttcatgtaaataaatgttatgtatccttagattgagtgaaaaagtata |
153 |
Q |
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| T |
38947025 |
aatcaacgtacaatttgcattgaaggacataataaaatcgaaattacacattttcatgtaaataaatgttatgtatcctcagattgagtgaaaaagtata |
38946926 |
T |
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| Q |
154 |
cacgataggataagtatataaatcaattagatgaacgaaggcggttgatgatggccctggatgttgtagggattttgttatcnnnnnnnnnnnnnnnnnn |
253 |
Q |
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| T |
38946925 |
cacgataggataagtatataaatcaattagatgaacgaaggcggttgatgatggccctggatgttgtagggattttgttatctttttttattttattttt |
38946826 |
T |
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| Q |
254 |
natgaacaaagaccatccattatcattttccttcccaacaacaagtcaacaatcatagttcaaaaaattgatacaaaatgt |
334 |
Q |
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| T |
38946825 |
tatgaacagagaccatccattatcattttccttcccaacaacaagtcaacaatcatagttcaaaagattgatacaaaatgt |
38946745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 42093676 - 42093600
Alignment:
| Q |
261 |
aaagaccatccattatcattttccttcccaacaacaagtcaacaatcatagttcaaaaaattgatacaaaatgtgtc |
337 |
Q |
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| T |
42093676 |
aaagaccatccattatcattttccttcccaacaacaagtcaacaaacatagttcaaaaaattgatacaaaacgtgtc |
42093600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 45204127 - 45204185
Alignment:
| Q |
174 |
aatcaattagatgaacgaaggcggttgatgatggccctggatgttgtagggattttgtt |
232 |
Q |
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| T |
45204127 |
aatcaattagacgaacgaaggcggttgaggatggccctggatgctgtaggaattttgtt |
45204185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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