View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7697_low_7 (Length: 298)

Name: NF7697_low_7
Description: NF7697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7697_low_7
NF7697_low_7
[»] chr5 (10 HSPs)
chr5 (1-298)||(41337024-41337321)
chr5 (4-238)||(31178437-31178671)
chr5 (129-233)||(41286216-41286320)
chr5 (4-169)||(31225166-31225331)
chr5 (109-172)||(41369731-41369794)
chr5 (4-169)||(31188482-31188647)
chr5 (119-238)||(41366335-41366454)
chr5 (120-238)||(41332155-41332273)
chr5 (27-72)||(41431274-41431319)
chr5 (120-160)||(41324322-41324362)
[»] chr4 (1 HSPs)
chr4 (111-230)||(17249277-17249396)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 41337321 - 41337024
Alignment:
Q  1 aggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337321 aggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctgg 41337222  T
Q  101 tcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337221 tcttcactctacttaccttttgaagtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgattt 41337122  T
Q  201 gaacacttgttggtgtctgttctttttcccaaacgctgaacgtgcaacgatcccataagtcattgagaaaatcgacttagagagattaatgattgatc 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41337121 gaacaattgttggtgtctgttctttttcccaaacgctgaacgtgccacgatcccataagtcattgagaaaatcgacttagagagattaacgattgatc 41337024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 31178437 - 31178671
Alignment:
Q  4 tcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtct 103  Q
    |||||||||||||||  ||   ||||| ||||| ||||||||| || ||| |||||||||||| |||||||||||   || ||  | |||| | ||||||    
T  31178437 tcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatatcatatcaatctctttatgaaacttttcaaatttggtct 31178536  T
Q  104 tcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaa 203  Q
    |||| | ||| |||  |||||| ||||||||||||||||||| |||||||||||||||| ||||||  |  | |  |  ||||| ||||| ||||| |||    
T  31178537 tcaccccactcacccgttgaagcattttaatagaaggatacacatcagcaatacaaaatcctcccatcaaactcgctatttcctttattgctgattggaa 31178636  T
Q  204 cacttgttggtgtctgttctttttcccaaacgctg 238  Q
    ||||||||||||| | ||| |||||||||||||||    
T  31178637 cacttgttggtgtttattccttttcccaaacgctg 31178671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 41286320 - 41286216
Alignment:
Q  129 tttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctttttc 228  Q
    |||||||||||||||||||||| |||| |||||| ||||||  |||| |||||||||||| |||| | |||||||  ||| ||||||| |||||||||||    
T  41286320 tttaatagaaggatacaaatcaacaatgcaaaatcctcccatcaggctcaatgcttcctccattgctaatttgaatgcttcttggtgtatgttctttttc 41286221  T
Q  229 ccaaa 233  Q
    |||||    
T  41286220 ccaaa 41286216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 31225331 - 31225166
Alignment:
Q  4 tcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtct 103  Q
    |||||||||||||||  ||   ||||| ||||| ||||||||| |||||| |||||||||||| |||||||||||   || |   | |||||| ||||||    
T  31225331 tcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatcttgcaatatcatatcaatctctttatgaagcttttcaactttggtct 31225232  T
Q  104 tcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctccca 169  Q
    || | ||||| |||  |||||| ||||| ||||||||||||| |||| ||||||||||| ||||||    
T  31225231 tcgccctactcacccattgaagcatttttatagaaggatacacatcaacaatacaaaatcctccca 31225166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 41369794 - 41369731
Alignment:
Q  109 ctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaata 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  41369794 ctacttaccctttgaagtattttaatagaaggatacaaatcagcaatgcaaaatccttccaata 41369731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 169
Target Start/End: Original strand, 31188482 - 31188647
Alignment:
Q  4 tcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtct 103  Q
    |||||||||||||||  ||   ||||| ||||| ||||||||  |||||| |||||||||||| |||||||||||   || |   | |||||| | ||||    
T  31188482 tcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatatcttgcaatatcatatcaatctctttatgaagcttttcaactttcgtct 31188581  T
Q  104 tcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctccca 169  Q
    || | ||||| |||  |||||  ||||||| ||||||||||| |||||||||||||||||||||||    
T  31188582 tcgccctactcacccattgaaacattttaacagaaggatacacatcagcaatacaaaattctccca 31188647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 41366454 - 41366335
Alignment:
Q  119 tttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtct 218  Q
    ||||||| ||||||||||||||||||||||| |||| | ||||| ||||||||||    |||  |||||  |||| |||||| ||||||| ||||||| |    
T  41366454 tttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttt 41366355  T
Q  219 gttctttttcccaaacgctg 238  Q
     |||||||| ||||| ||||    
T  41366354 attcttttttccaaatgctg 41366335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 41332273 - 41332155
Alignment:
Q  120 ttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctg 219  Q
    |||||| ||||||||||||||||||||||| |||||   |||| |||| |||||  ||||| ||| ||| |||| |||| ||||||| | ||||| |||     
T  41332273 ttgaagcattttaatagaaggatacaaatctgcaatttcaaatcctcctaatagcaccaatactttctccattgctgatatgaacacatcttggtttcta 41332174  T
Q  220 ttctttttcccaaacgctg 238  Q
    ||| |||||||||| ||||    
T  41332173 ttccttttcccaaaagctg 41332155  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 41431319 - 41431274
Alignment:
Q  27 gtgattgtttctatgatcattgatgatgtcttgcaatatcctatca 72  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  41431319 gtgactgtttttatgatcattgatgatgtcttgcaatatcgtatca 41431274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 41324362 - 41324322
Alignment:
Q  120 ttgaagtattttaatagaaggatacaaatcagcaatacaaa 160  Q
    |||||| | |||||||||||||||||||||| |||||||||    
T  41324362 ttgaagcaatttaatagaaggatacaaatcaacaatacaaa 41324322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 17249277 - 17249396
Alignment:
Q  111 acttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgt 210  Q
    ||||||| ||| ||||||||| |||||||||||||||||| ||||||||||| ||||||| |  | || |  ||||||||||| ||||||||||||||||    
T  17249277 acttacccttttaagtattttgatagaaggatacaaatcaacaatacaaaatcctcccaacaaactcactatttcctctattgctgatttgaacacttgt 17249376  T
Q  211 tggtgtctgttctttttccc 230  Q
    |||||| ||||| |||||||    
T  17249377 tggtgtttgttccttttccc 17249396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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