View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7697_low_9 (Length: 250)
Name: NF7697_low_9
Description: NF7697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7697_low_9 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 32204015 - 32203770
Alignment:
| Q |
11 |
cagagactattaactaagccaaaggtagaaacatctccaacaaattcaatcagttccagttttatctcaaattaagaatatcaatagtgtgtacaacgtt |
110 |
Q |
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| T |
32204015 |
cagagactattaactaagccaaaggtaaaaacatctccaaccaattcaatcagttccagttttatctcaaattaagaatatcaataatgtgtacaacgtt |
32203916 |
T |
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| Q |
111 |
acaat------ggtcgcaacaaattctattatcaataaattcatggtgtggactaattaaattaaagagctttcaattacatctaactcagctgcctcta |
204 |
Q |
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| T |
32203915 |
acaattacaatggtcgcaacaaattctattatcaataaattcatggtgtggactaattaaattaaagagctttcaattacatctaactcagctgcctcta |
32203816 |
T |
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| Q |
205 |
agaaacgagacatatccatttccaggcacttttgttgtatcagaga |
250 |
Q |
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| T |
32203815 |
agaaacgagacatatccatttccaagcacttttgttgtatcagaga |
32203770 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 35566184 - 35566223
Alignment:
| Q |
211 |
gagacatatccatttccaggcacttttgttgtatcagaga |
250 |
Q |
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| T |
35566184 |
gagacatatccatttccaggcacttttgttgtatcagaga |
35566223 |
T |
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