View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7698_high_5 (Length: 368)
Name: NF7698_high_5
Description: NF7698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7698_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 347
Target Start/End: Complemental strand, 30655335 - 30655003
Alignment:
| Q |
21 |
ataacaataataccaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcaacaaaaaatccaccttta |
120 |
Q |
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| T |
30655335 |
ataacaataacaccaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcagcaaaaactccaccttta |
30655236 |
T |
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| Q |
121 |
aaaccccttaagagctaataccacccaaaagatgcaaccaccaca------cccaagcaaacacctataacacttcaccaccgctctttcaagccaccgt |
214 |
Q |
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| T |
30655235 |
aaaccccttaagagctaataccacccaaaagatgcaaccaccactaccacgcccaagcaaacacctataacacttcaccaccactctttcaagccaccgt |
30655136 |
T |
|
| Q |
215 |
aacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaacagatccnnnnnnncgtatatcagcacctct |
314 |
Q |
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| T |
30655135 |
aacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaaaagatccaaaaaaacgtatattaacacctct |
30655036 |
T |
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| Q |
315 |
attcctgttcccatcccttttacaaaacactac |
347 |
Q |
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| T |
30655035 |
gttcctcttcccatcccttttacaaaacactac |
30655003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 166 - 347
Target Start/End: Complemental strand, 38929003 - 38928823
Alignment:
| Q |
166 |
cccaagcaaacacctataacacttcaccaccgctctttcaagccaccgtaacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcc |
265 |
Q |
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| T |
38929003 |
cccaagcaaacacctataacacttcaccatcgctctttcaagccaccataacaaccccaaaacaccgtacaaaacctcacatcaacacccataagtctcc |
38928904 |
T |
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| Q |
266 |
caagaccatccaccaaaacagatccnnnnnnncgtatatcagcacctctattcctgttcccatcccttttacaaaacactac |
347 |
Q |
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||||||| |||||||||||| |||| || ||| || ||||| | ||||| ||||||||| |||||||||||||||| |
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| T |
38928903 |
caagaccctccaccaaaacaaatcc-aaaaaacgaatagcaacacctatgttcctcttcccatcctttttacaaaacactac |
38928823 |
T |
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