View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7698_low_12 (Length: 287)
Name: NF7698_low_12
Description: NF7698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7698_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 25849396 - 25849657
Alignment:
| Q |
18 |
gaaaataacctacataaaagtggtaaaagaccaaccccatcaacaggta--gaagaactaaaatacgaaaatatataaaaagacatgtttaaaagtataa |
115 |
Q |
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| T |
25849396 |
gaaaataacctacataaaagtggtaaaagaccaaccccaccaacaggtatagaagaactaaaatacgaaaatatataaaaagacatgtttaaaagtataa |
25849495 |
T |
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| Q |
116 |
atatttgagatttagatcatctccacatgttattctctcaacttctatccactttaaatgtcaacctttgattactctaacagttgaaaaatgaaataca |
215 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||| ||||||||| |
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| T |
25849496 |
atatttgagatttagatcctctccacatgttattctctcaacttctatccactataaatctcaacctttgattattctcacagttgaaaactgaaataca |
25849595 |
T |
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| Q |
216 |
aataaatggaagaatacgattagttttgctctccctctccaacaagccggctctagttcttctc |
279 |
Q |
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| T |
25849596 |
aataaatgg--gaatacgattagttttgctctccctctccaataagccggccctagtttttctc |
25849657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Complemental strand, 9619632 - 9619603
Alignment:
| Q |
244 |
ctctccctctccaacaagccggctctagtt |
273 |
Q |
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| T |
9619632 |
ctctccctctccaacaagccggctctagtt |
9619603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 20569067 - 20569096
Alignment:
| Q |
244 |
ctctccctctccaacaagccggctctagtt |
273 |
Q |
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| T |
20569067 |
ctctccctctccaacaagccggctctagtt |
20569096 |
T |
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