View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7698_low_13 (Length: 287)
Name: NF7698_low_13
Description: NF7698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7698_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 41651041 - 41651300
Alignment:
| Q |
7 |
aaaccaagtatcgttaaattgatgaaacttcaaacattatgatccttgtgaattgtgttctagaaaattctgaatgtctcaagctgaagtgaaattgggt |
106 |
Q |
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| T |
41651041 |
aaaccaagcatcgttaaattgatgaaactacaaacattatgatccttgtgaattgtgttctagaaaattctgaatgtctcaagctgaagtgaaattgggt |
41651140 |
T |
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| Q |
107 |
tgccatagtgaattggtgagcgttagccgtgccttggtgactgttagattcagatcaaa---ttcacaaaatatgtggattttgttataatcaaaattac |
203 |
Q |
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| T |
41651141 |
tgccatagtgaattggtgagtgttagccgtgccttggtgactgttagattcagatcaaatagttcacaaaatatgtggattttgttataatcaaaattac |
41651240 |
T |
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| Q |
204 |
cgagcttgaaatgcggacaatccgatctttatgcaacgctcaacactcctgtctgacggt |
263 |
Q |
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| T |
41651241 |
cgagcttgaaatgcggacaatccgatctttatgcaacgctcaacactcctttctgacggt |
41651300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 43227151 - 43226965
Alignment:
| Q |
7 |
aaaccaagtatcgttaaattgatgaaacttcaaacattatgatccttgtgaattgtgttctagaaaattctgaatgtctcaagctgaagtgaaattgggt |
106 |
Q |
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|||||||| ||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
43227151 |
aaaccaagcatcattaaagtgctgaaactacaaacattatgatccttgtgaattgtgttctagaaaattctgaatctctcaagctgatgtgaaattgggt |
43227052 |
T |
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| Q |
107 |
tgccatagtgaattggtgagcgttag-ccgtgccttggtgactgttagattcagatcaaa---ttcacaaaatatgtggattttgtt |
189 |
Q |
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| T |
43227051 |
tgccatagtgaattggtgagcgttagtccgtgccttgatgaccgttagattcagatcaaatagttcacaaaatatgtggattttgtt |
43226965 |
T |
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