View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7698_low_17 (Length: 236)
Name: NF7698_low_17
Description: NF7698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7698_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 34317686 - 34317902
Alignment:
| Q |
1 |
caagcaacaaaaggaaggtgcaatcgacagctttggatattcagacgggacattaaaaattcaaatggatactacgagtcatgaaaaaagaagagcttca |
100 |
Q |
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| T |
34317686 |
caagcaacaaaaggaaggtgcaatcgacagctttggatattcagacgggacattaaaaattcaaatggatactacgagtcatgaaaaaagaagagcttca |
34317785 |
T |
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| Q |
101 |
actagtgacattcctaatccaaagataagaaagagttcagagataggtcttaaccaatctcttgaatctgcagaatcagaagcaaaccatacagtatttg |
200 |
Q |
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| T |
34317786 |
actagtgacattcctaatccaaagataagaaagagttcagagataggtcttaaccaatctcttgaatctgcagaatcagaagcaaaccatacagtatttg |
34317885 |
T |
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| Q |
201 |
actccgtcataccaaca |
217 |
Q |
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| T |
34317886 |
actccgtcataccaaca |
34317902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 34327754 - 34327849
Alignment:
| Q |
104 |
agtgacattcctaatccaaagataagaaagagttcagagataggtcttaaccaatctcttgaatctgcagaatcagaagcaaaccatacagtattt |
199 |
Q |
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| T |
34327754 |
agtgacattcttgatccaaagaaaagatagagttcacagataggttttaatcaaccttttgaatatgtagattcagaagcaaaccatacagtattt |
34327849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 26375824 - 26375929
Alignment:
| Q |
112 |
tcctaatccaaagataagaaagagttcagagataggtcttaaccaatctcttgaatctgcagaatcagaagcaaaccatacagtatttgactccgtcata |
211 |
Q |
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| T |
26375824 |
tcctgatccaatgataagaaaaacattagagacaggtcttaaccaatctcttgagtatgcggaatcagaagcaaaccatacaatttttgattccaccata |
26375923 |
T |
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| Q |
212 |
ccaaca |
217 |
Q |
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|||||| |
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| T |
26375924 |
ccaaca |
26375929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 34322293 - 34322380
Alignment:
| Q |
104 |
agtgacattcctaatccaaagataagaaagagttcagagataggtcttaaccaatctcttgaatctgcagaatcagaagcaaaccatac |
192 |
Q |
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| T |
34322293 |
agtgacattgttgatccgaagataagaaagagttcgcagataggtcttaatcaaccttttgaatct-aagattcagaagcaaaccatac |
34322380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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