View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7698_low_19 (Length: 229)
Name: NF7698_low_19
Description: NF7698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7698_low_19 |
 | |
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| [»] chr6 (30 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0199 (1 HSPs) |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0288 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 4564427 - 4564205
Alignment:
| Q |
7 |
gctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttcca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4564427 |
gctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttcca |
4564328 |
T |
|
| Q |
107 |
acctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacacc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
4564327 |
acctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgggatccgttgtttatgtgaattttggaagcattacagttatgacacc |
4564228 |
T |
|
| Q |
207 |
agaacaactgttggaatttgctt |
229 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
4564227 |
aaaacaactgttggaatttgctt |
4564205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 4592947 - 4592756
Alignment:
| Q |
7 |
gctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttcca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
4592947 |
gctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaatccatcaattggattcttttggttcca |
4592848 |
T |
|
| Q |
107 |
acctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagtt |
198 |
Q |
| |
|
|| | ||||||||||||||| |||||||| ||||||||||||| ||||| || | ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
4592847 |
acatatggaaagaagatactgagtgtcttaaatggcttgaatcgaaggaatcgggttccgttgtttatgtgaatttcggcagccttacagtt |
4592756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 4617738 - 4617516
Alignment:
| Q |
7 |
gctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttcca |
106 |
Q |
| |
|
||||||||||| | |||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
4617738 |
gctctctcctccacaattccttctatttatccgattggccctttaccttcattattaaaacaaactccacaaattcatcaattggactctttagattcca |
4617639 |
T |
|
| Q |
107 |
acctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacacc |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
4617638 |
acctttggaaagaagatacagagtgtcttgattggcttgaatccaaggagccgggatcagttgtttatgtgaatttcggcagcattacagttatgacacc |
4617539 |
T |
|
| Q |
207 |
agaacaactgttggaatttgctt |
229 |
Q |
| |
|
|| ||| | |||||||||||| |
|
|
| T |
4617538 |
cgagcaattactggaatttgctt |
4617516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 4602458 - 4602306
Alignment:
| Q |
54 |
ttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaagaagatactaagtgtcttgaatggcttgaatccaag |
153 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4602458 |
ttcattattaaatcaaactccacaaattcatcaattggactgtttaggttccaacctctggaaagaagatactgagtgtcttgaatggcttgaatccaag |
4602359 |
T |
|
| Q |
154 |
gagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacacc |
206 |
Q |
| |
|
|||||| |||||||||||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
4602358 |
gagccgggatccgttgtttatgtgaattttggcagcattacagttatgacacc |
4602306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 4299240 - 4299448
Alignment:
| Q |
7 |
gctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttcca |
106 |
Q |
| |
|
||||||| |||||||| |||||| | || | ||||| |||||||||||||||||||| ||||||||||| | |||| ||||| ||||||||||||| |
|
|
| T |
4299240 |
gctctctattctatgttcccttctttatatactattggacctttaccttcattattaaatcaaactccacata---atcacttggaatctttaggttcca |
4299336 |
T |
|
| Q |
107 |
acctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacacc |
206 |
Q |
| |
|
| ||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||||||||| || ||| |||||||| |||| || |
|
|
| T |
4299337 |
atctttggaaagaagataccaaatgtcttgaatggcttgaatccaaggagccgggatcggttgtttatgtgaattttggcagcgttacagttatgactcc |
4299436 |
T |
|
| Q |
207 |
agaacaactgtt |
218 |
Q |
| |
|
||| |||||||| |
|
|
| T |
4299437 |
agagcaactgtt |
4299448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 4256074 - 4256262
Alignment:
| Q |
38 |
ccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaagaagatactaagtgtcttga |
137 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| | ||| |||| || ||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4256074 |
ccattggacctttaccttcattattaaatcaaactccacatagtcac---ttggcatcgttaggttccaatctttggaaagaagataccaagtgtcttga |
4256170 |
T |
|
| Q |
138 |
atggcttgaatccaaggagcc-gagatccgttgtttatgtgaatttcggaagcattacagttttgacaccagaacaactgttggaatttgctt |
229 |
Q |
| |
|
|||||||||||||||||| || ||| || |||||||| |||||||| || |||||||||||| |||| ||||| |||||||| || ||||||| |
|
|
| T |
4256171 |
atggcttgaatccaaggaacctgag-tctgttgtttacgtgaattttggcagcattacagttatgactccagatcaactgttagagtttgctt |
4256262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 4266585 - 4266773
Alignment:
| Q |
7 |
gctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttcca |
106 |
Q |
| |
|
||||||| ||||||||| |||||| | ||| |||||||||| || |||| || ||||| |||| |||||||| |||| |||| |||||| ||||| |
|
|
| T |
4266585 |
gctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaa---atcacttggcatctttaaattcca |
4266681 |
T |
|
| Q |
107 |
acctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagtt |
198 |
Q |
| |
|
| |||||||||||||||||||| |||||||| ||||||||||| || || || ||||| ||||||||||| ||||| || ||||| |||||| |
|
|
| T |
4266682 |
atctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaagatctgttgtttatgtaaattttggtagcatcacagtt |
4266773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 4259606 - 4259772
Alignment:
| Q |
40 |
attggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaagaagatactaagtgtcttgaat |
139 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| | ||| | ||| || ||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
4259606 |
attggacctttaccttcattattaaatcaaactccacataatcacc---tggcatcgttaggttccaatctttggaaagaagataccaaatgtcttgaat |
4259702 |
T |
|
| Q |
140 |
ggcttgaatccaaggagcc-gagatccgttgtttatgtgaatttcggaagcattacagttttgacaccaga |
209 |
Q |
| |
|
||||||||| ||||| || ||| || |||||||| |||||||| || |||||||||||| |||| ||||| |
|
|
| T |
4259703 |
ggcttgaatttaaggaacctgag-tctgttgtttacgtgaattttggcagcattacagttatgactccaga |
4259772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 4557744 - 4557621
Alignment:
| Q |
104 |
ccaacctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgac |
203 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| || ||||| |||||| |||| |
|
|
| T |
4557744 |
ccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgac |
4557645 |
T |
|
| Q |
204 |
accagaacaactgttggaatttgc |
227 |
Q |
| |
|
||||| ||||||| || ||||| |
|
|
| T |
4557644 |
ggcagaaaaactgttagagtttgc |
4557621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 4586347 - 4586130
Alignment:
| Q |
9 |
tctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaac |
108 |
Q |
| |
|
||||||| ||| ||| |||||| |||| |||||||||||||| | ||||| ||||| |||| |||||||| | || || | |||||| || | || |
|
|
| T |
4586347 |
tctctccactaagttcccttctatttatgccattggccctttatcatcatttttaaatcaaagtccacaaa---accacttagcatctttaagtacaaat |
4586251 |
T |
|
| Q |
109 |
ctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacaccag |
208 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |||| |||||| |||| ||| |
|
|
| T |
4586250 |
ctttggaaagaggataccaagtgtcttgattggcttgaatcaaaggaaccgaggtccgttgtttatgtgaattttgggagcacaacagttatgactacag |
4586151 |
T |
|
| Q |
209 |
aacaactgttggaatttgctt |
229 |
Q |
| |
|
|| |||| || || ||||||| |
|
|
| T |
4586150 |
aaaaactattagagtttgctt |
4586130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 4514549 - 4514721
Alignment:
| Q |
16 |
tctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttgga |
115 |
Q |
| |
|
|||||| | |||||||| ||| |||||||||| || |||| || || || |||| |||||||| |||| ||||| |||||||||||||| ||||||| |
|
|
| T |
4514549 |
tctatgctcccttctctatacaccattggcccatttgcttcgtttttgaatcaaagtccacaaa---atcacttggaatctttaggttccaatctttgga |
4514645 |
T |
|
| Q |
116 |
aagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcat |
191 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || || | |||| ||||||||||| ||||| || ||||| |
|
|
| T |
4514646 |
aagaagatactaaatgtcttgaatggcttgaatcaaaagaatcaggatctgttgtttatgttaattttggtagcat |
4514721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 4613231 - 4613356
Alignment:
| Q |
104 |
ccaacctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgac |
203 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| || ||||| || ||| |||| |
|
|
| T |
4613231 |
ccaatctttggaaagaagataccaagtgtcttgattggcttgaatccaaggaaccgaagtccgttgtttatgtgaattttgggagcatgaccgttatgac |
4613330 |
T |
|
| Q |
204 |
accagaacaactgttggaatttgctt |
229 |
Q |
| |
|
||||| |||| || || ||||||| |
|
|
| T |
4613331 |
tgcagaaaaactattagagtttgctt |
4613356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 4598882 - 4598703
Alignment:
| Q |
9 |
tctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaac |
108 |
Q |
| |
|
||||||| |||||| |||| | |||| |||||||||||||| |||| || ||||| |||| || ||||| ||| |||| ||||||||| |||| |
|
|
| T |
4598882 |
tctctccagtatgttcccttgtatttatgccattggccctttatcttcgtttttaaatcaaagtcaacaaaagcat---ttggcatctttaggtaccaat |
4598786 |
T |
|
| Q |
109 |
ctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcat |
191 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| || || || || ||||||||||||||||| || ||||| |
|
|
| T |
4598785 |
ctttggaaagaagataccaagtgtcttgactggcttgaatccaatgaaccaaggtctgttgtttatgtgaattttgggagcat |
4598703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 4622819 - 4622708
Alignment:
| Q |
41 |
ttggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaagaagatactaagtgtcttgaatg |
140 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| | |||| |||| ||| |||||||||| |||||||||||||||| ||||||||||| || |
|
|
| T |
4622819 |
ttggacctttaccttcattattaaatcaaactccacata---atcacttggcatctctaggttccaatctttggaaagaagatatcaagtgtcttgagtg |
4622723 |
T |
|
| Q |
141 |
gcttgaatccaagga |
155 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4622722 |
gcttgaatccaagga |
4622708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 4571591 - 4571468
Alignment:
| Q |
104 |
ccaacctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgac |
203 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |||| |||||| |||| |
|
|
| T |
4571591 |
ccaatctttggaaagaagataacaagtgtcttgattggcttgaatcaaaggaaccgaggtccgttgtttatgtgaattttgggagcaggacagttatgac |
4571492 |
T |
|
| Q |
204 |
accagaacaactgttggaatttgc |
227 |
Q |
| |
|
||||| ||||||| || ||||| |
|
|
| T |
4571491 |
ttcagaaaaactgttagagtttgc |
4571468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 4461744 - 4461617
Alignment:
| Q |
102 |
ttccaacctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttg |
201 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||| || || || |||| ||||| ||||| ||||| || ||||| |||||| || |
|
|
| T |
4461744 |
ttccaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtctatgtaaattttggcagcatcacagttatg |
4461645 |
T |
|
| Q |
202 |
acaccagaacaactgttggaatttgctt |
229 |
Q |
| |
|
|| || || |||||||| || ||||||| |
|
|
| T |
4461644 |
actcctgatcaactgttagagtttgctt |
4461617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 4580045 - 4579928
Alignment:
| Q |
110 |
tttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacaccaga |
209 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||||||||||||||| || || || ||||||||||||||||| || ||| | |||||| |||| |||| |
|
|
| T |
4580045 |
tttggaaagaagataccaagtgtctttattggcttgaatccaaggaacctaggtctgttgtttatgtgaattttgggagcttgacagttatgactgcaga |
4579946 |
T |
|
| Q |
210 |
acaactgttggaatttgc |
227 |
Q |
| |
|
| ||||||| || ||||| |
|
|
| T |
4579945 |
aaaactgttagagtttgc |
4579928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 4506559 - 4506389
Alignment:
| Q |
18 |
tatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaa |
117 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||| ||||||| |||| |||| |||||||| |||| || | |||||| ||| || ||||||||| |
|
|
| T |
4506559 |
tatgtttccttctctatacactattggccctttaacttcatttgtaaatcaaagtccacaaa---atcagtttgcaactttagattcaaatctttggaaa |
4506463 |
T |
|
| Q |
118 |
gaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcat |
191 |
Q |
| |
|
|| |||||||| ||||| |||||||| ||||| || || ||| || ||||||||||||||||| |||||||| |
|
|
| T |
4506462 |
gaggatactaaatgtctcgaatggctggaatcaaaagaaccggcttctgttgtttatgtgaattttggaagcat |
4506389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 4517016 - 4516826
Alignment:
| Q |
25 |
ccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaagaagata |
124 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||||| || || |||| ||| |||| || | |||| |||| ||||||| || |||||||||||||||| |
|
|
| T |
4517016 |
ccttctatttatgccattggccctttaacttcatttttgaatcaaagtccgcaaa---ataacttggcttctataggttctaatctttggaaagaagata |
4516920 |
T |
|
| Q |
125 |
ctaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacaccagaacaactgtt |
218 |
Q |
| |
|
|| |||||||||||||||||||| ||||| | | || || |||||||||||||| |||||||| || || |||| ||||| |||||||| |
|
|
| T |
4516919 |
tgaaatgtcttgaatggcttgaatctaaggaacaaggttctgtagtttatgtgaattttggaagcatcacggtcatgactccagatcaactgtt |
4516826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 4626580 - 4626445
Alignment:
| Q |
94 |
tctttaggttccaacctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcatta |
193 |
Q |
| |
|
|||||||||||||| |||||||||||||| || || ||||||||||||||||||| |||||| || | || |||||||||||||| || || ||| ||| |
|
|
| T |
4626580 |
tctttaggttccaatctttggaaagaagacaccaattgtcttgaatggcttgaattcaaggaaccaaagtctgttgtttatgtgaactttggcagcgtta |
4626481 |
T |
|
| Q |
194 |
cagttttgacaccagaacaactgttggaatttgctt |
229 |
Q |
| |
|
|||| |||| ||| | ||||||| || ||||||| |
|
|
| T |
4626480 |
tagttatgactccacagaaactgttagagtttgctt |
4626445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 4458307 - 4458120
Alignment:
| Q |
8 |
ctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaa |
107 |
Q |
| |
|
|||||| ||||||||| |||||| | ||| |||||||||| || |||| || |||| |||| |||||||| |||| |||| |||||| |||||| |
|
|
| T |
4458307 |
ctctctactctatgttcccttctatatacaccattggcccatttgcttcttttataaatcaaagtccacaaa---atcacttggcatctttaaattccaa |
4458211 |
T |
|
| Q |
108 |
cctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagtt |
198 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||||||| || || || | || ||| ||||||| ||||| |||||||| |||||| |
|
|
| T |
4458210 |
tctttggaaagaatatactaaatgtcttgagtggcttgaatcaaaagaaccaaagtctgttatttatgtaaattttggaagcatcacagtt |
4458120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 4481307 - 4481225
Alignment:
| Q |
109 |
ctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcat |
191 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || || || |||| ||||||||||| ||||| || ||||| |
|
|
| T |
4481307 |
ctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaattttggcagcat |
4481225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 4489873 - 4489955
Alignment:
| Q |
109 |
ctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcat |
191 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || || || |||| ||||||||||| ||||| || ||||| |
|
|
| T |
4489873 |
ctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaattttggcagcat |
4489955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 4561118 - 4561036
Alignment:
| Q |
109 |
ctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcat |
191 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || || || |||| ||||||||||| ||||| || ||||| |
|
|
| T |
4561118 |
ctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaattttggcagcat |
4561036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 4574922 - 4574840
Alignment:
| Q |
109 |
ctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcat |
191 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| || || || ||||| ||||||||||| ||||| || ||||| |
|
|
| T |
4574922 |
ctttggaaagaagatactaaatgtcttgaatggattgaatcaaaagaaccaagatctgttgtttatgtaaattttggcagcat |
4574840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 4503915 - 4504004
Alignment:
| Q |
109 |
ctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagtt |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| || || || |||| ||||||||||| ||||| || |||||||||||| |
|
|
| T |
4503915 |
ctttggaaagaagatactaaatgtcttgattggcttgaattaaaagaaccaggatctgttgtttatgtaaattttggcagcattacagtt |
4504004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 4470417 - 4470297
Alignment:
| Q |
109 |
ctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacaccag |
208 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| || || || |||| ||||| ||||| |||||||| ||| | |||||| || | |||| |
|
|
| T |
4470417 |
ctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaggatctgttgtctatgtaaatttcggcagcgtcacagttatgtctccag |
4470318 |
T |
|
| Q |
209 |
aacaactgttggaatttgctt |
229 |
Q |
| |
|
| ||||||| || ||||||| |
|
|
| T |
4470317 |
agaaactgttagagtttgctt |
4470297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 3172370 - 3172317
Alignment:
| Q |
94 |
tctttaggttccaacctttggaaagaagatactaagtgtcttgaatggcttgaa |
147 |
Q |
| |
|
||||||| ||| || |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3172370 |
tctttagattctaatctttggaaagaagatactaaatgtcttgaatggcttgaa |
3172317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 4568739 - 4568628
Alignment:
| Q |
25 |
ccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaagaagata |
124 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||| || || || |||| ||| |||| | || |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
4568739 |
ccttctatttacgccattggccctttatcttcgtttttgaatcaaaatccccaaa---agcacttggcttctttaggttccaatctttggaaagaagata |
4568643 |
T |
|
| Q |
125 |
ctaagtgtcttgaat |
139 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
4568642 |
tgaaatgtcttgaat |
4568628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 4835518 - 4835571
Alignment:
| Q |
94 |
tctttaggttccaacctttggaaagaagatactaagtgtcttgaatggcttgaa |
147 |
Q |
| |
|
|||||||||||| | |||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
4835518 |
tctttaggttccgatctttggaaggaagatacaaaatgtcttgaatggcttgaa |
4835571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 1674937 - 1674720
Alignment:
| Q |
12 |
ctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctt |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
1674937 |
ctcctctttgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattagaatctttaggttccaacctt |
1674838 |
T |
|
| Q |
112 |
tggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacaccagaac |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| || ||| |||| |||||||||||||||||||| ||||||| ||| |||| ||||| | |
|
|
| T |
1674837 |
tggaaagaagatactgagtgtcttgaatggcttgaatccaacgaaccgggatcggttgtttatgtgaatttcggtagcattattgttatgactccagatc |
1674738 |
T |
|
| Q |
212 |
aactgttggaatttgctt |
229 |
Q |
| |
|
|||| ||||| ||||||| |
|
|
| T |
1674737 |
aactattggagtttgctt |
1674720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 16685785 - 16685905
Alignment:
| Q |
109 |
ctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacaccag |
208 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| || ||||| |||||| |||| ||| |
|
|
| T |
16685785 |
ctttggaaataagataccaagtgtcttgattggcttgaatccaaggaaccgagttccgttgtttatgtgaattttgggagcatgacagttatgactgcag |
16685884 |
T |
|
| Q |
209 |
aacaactgttggaatttgctt |
229 |
Q |
| |
|
|| |||| || || ||||||| |
|
|
| T |
16685885 |
aaaaactattagagtttgctt |
16685905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 1281830 - 1281608
Alignment:
| Q |
7 |
gctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttcca |
106 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1281830 |
gctctctcctctataattccttctgtttacccgattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttagattcca |
1281731 |
T |
|
| Q |
107 |
acctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacacc |
206 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
1281730 |
acctttggaaagaagatatcgagtgtcttcaatggcttgaatcgaaggaaccgagatctgttgtttatgtgaatttcggaagcattacagttatgactcc |
1281631 |
T |
|
| Q |
207 |
agaacaactgttggaatttgctt |
229 |
Q |
| |
|
||| ||||| ||||||||||| |
|
|
| T |
1281630 |
agagcaacttcaggaatttgctt |
1281608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 174 - 1
Alignment:
| Q |
12 |
ctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctt |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
174 |
ctcctctttgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattagaatctttaggttccaacctt |
75 |
T |
|
| Q |
112 |
tggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcgg |
185 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| || ||| |||| |||||||||||||||||||| |
|
|
| T |
74 |
tggaaagaagatactgagtgtcttgaatggcttgaatccaacgaaccgggatcggttgtttatgtgaatttcgg |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 4108 - 4324
Alignment:
| Q |
7 |
gctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttcca |
106 |
Q |
| |
|
||||||| |||||||| |||||| | || ||||||| |||||| ||||||||||||| ||||||||||| | ||| ||| |||||||||||| |
|
|
| T |
4108 |
gctctctattctatgttcccttctttatataccattggacctttaacttcattattaaatcaaactccacataatcactaat------ctttaggttcca |
4201 |
T |
|
| Q |
107 |
acctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagcc-gagatccgttgtttatgtgaatttcggaagcattacagttttgacac |
205 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| ||||||| ||||||||| || ||| || ||||||||||||||||| ||||||||||||||| |||| | |
|
|
| T |
4202 |
atctttggaaagaagataccaagtgtcttgagtggcttgcatccaaggaacctgag-tcggttgtttatgtgaattttggaagcattacagttatgactc |
4300 |
T |
|
| Q |
206 |
cagaacaactgttggaatttgctt |
229 |
Q |
| |
|
|||| |||||||| || ||||||| |
|
|
| T |
4301 |
cagatcaactgttagagtttgctt |
4324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 3179 - 3357
Alignment:
| Q |
49 |
ttaccttcattattaaaccaaactccacaaattcatcaattggattcttt-aggttccaacctttggaaagaagatactaagtgtcttgaatggcttgaa |
147 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||| ||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
3179 |
ttaccttcattattaagtcaaactccacata---atcacttggaatcttttaggttccaatctttggaaagaagataccaagtgtcttgaatggctcgaa |
3275 |
T |
|
| Q |
148 |
tccaaggagcc-gagatccgttgtttatgtgaatttcggaagcattacagttttgacaccagaacaactgttggaatttgctt |
229 |
Q |
| |
|
|||||||| || ||| || |||||||||||||||||||| |||||||||||| |||| ||| | |||||||| |||||||||| |
|
|
| T |
3276 |
tccaaggaacctgag-tctgttgtttatgtgaatttcggcagcattacagttatgactccaaatcaactgttagaatttgctt |
3357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 24103712 - 24103524
Alignment:
| Q |
7 |
gctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttcca |
106 |
Q |
| |
|
||||||| ||||||||| |||||| | ||| |||||||||| || |||| || ||||| |||| |||||||| |||| |||| |||||| ||||| |
|
|
| T |
24103712 |
gctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaa---atcacttggcatctttaaattcca |
24103616 |
T |
|
| Q |
107 |
acctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgagatccgttgtttatgtgaatttcggaagcattacagtt |
198 |
Q |
| |
|
| |||||||||||||||||||| |||||||| ||||||||||| || || || ||||| ||||||||||| ||||| || ||||| |||||| |
|
|
| T |
24103615 |
atctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaagatcagttgtttatgtaaattttggtagcatcacagtt |
24103524 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 3087102 - 3086914
Alignment:
| Q |
38 |
ccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaagaagatactaagtgtcttga |
137 |
Q |
| |
|
||||||| || ||||||||| || |||| |||||| |||| | |||| |||| |||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
3087102 |
ccattggaccattaccttcactactaaatcaaacttcacata---atcacttggcatctttaggttccaatctttggaaagaagataccaagtgtcttga |
3087006 |
T |
|
| Q |
138 |
atggcttgaatccaa-ggagccgagatccgttgtttatgtgaatttcggaagcattacagttttgacaccagaacaactgttggaatttgctt |
229 |
Q |
| |
|
|||||||||||| || ||| ||| || ||||||||||||| ||| || |||||||||||| |||| | ||| ||||| || || ||||||| |
|
|
| T |
3087005 |
atggcttgaatcaaagggacttgag-tctgttgtttatgtgagttttggcagcattacagttatgactcaagagcaactattagagtttgctt |
3086914 |
T |
|
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