View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7698_low_2 (Length: 685)
Name: NF7698_low_2
Description: NF7698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7698_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 4650163 - 4650481
Alignment:
| Q |
16 |
aatatcactccattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttacca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650163 |
aatatcactccattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttacca |
4650262 |
T |
|
| Q |
116 |
tgatataattctgtatccctgcaaccataaatttgaaattaatacaattttttatttatgtgccaacaaaacgtacgtgttaataattgacatgcccctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650263 |
tgatataattctgtatccctgcaaccataaatttgaaattaatacaattttttatttatgtgccaacaaaacgtacgtgttaataattgacatgcccctc |
4650362 |
T |
|
| Q |
216 |
acacatcacctaatatgtccnnnnnnnnngtagttacctaatatgtccttttcaggttttatatgtcagcaataattcacctagtttatttattt---tt |
312 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
4650363 |
acacatcacctaatatgtcc-ttttttttgtagttacctaatatgtccttttcaggttgtatatgtcagcaataattcacctagtttatttatttttatt |
4650461 |
T |
|
| Q |
313 |
actgaaataattcacctagc |
332 |
Q |
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|||||||||||||||||||| |
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| T |
4650462 |
actgaaataattcacctagc |
4650481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 425 - 670
Target Start/End: Original strand, 4650570 - 4650815
Alignment:
| Q |
425 |
atcatgacattgaatatactctattgtaaatatagaaggttatgactcataattccaattactttctcctatgaacaattaattaatgttagaaaactta |
524 |
Q |
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| T |
4650570 |
atcatgacattgaatatactctattgtaaatatagaaggttatgactcataattccaattactttctcctatgaacaattaattaatgttagaaaactta |
4650669 |
T |
|
| Q |
525 |
cttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatc |
624 |
Q |
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| T |
4650670 |
cttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatc |
4650769 |
T |
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| Q |
625 |
ttaacaccaagatttaccagtttgttgtacaatttttgtgtctctg |
670 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650770 |
ttaacaccaagatttaccagtttgttgtacaatttttgtgtctctg |
4650815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 23682093 - 23681988
Alignment:
| Q |
16 |
aatatcactccattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttacca |
115 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
23682093 |
aatatcactccattggtctccactatttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaaatgctattttacca |
23681994 |
T |
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| Q |
116 |
tgatat |
121 |
Q |
| |
|
|||||| |
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|
| T |
23681993 |
tgatat |
23681988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 505 - 581
Target Start/End: Complemental strand, 23680759 - 23680683
Alignment:
| Q |
505 |
aattaatgttagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgt |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23680759 |
aattaatgttagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttgtttcaagttcttagctgt |
23680683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 575 - 670
Target Start/End: Complemental strand, 23679594 - 23679499
Alignment:
| Q |
575 |
tagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatcttaacaccaagatttaccagtttgttgtacaatttttgtgtctctg |
670 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23679594 |
tagccgtaatgtccttctgtttgagtggtcttcctgttaagaacacaaatttgacaccaagatttaccagtttgttgtacaatttttgtgtctctg |
23679499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 4645869 - 4645975
Alignment:
| Q |
16 |
aatatcactccattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttacca |
115 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |||||| |||||||||| || | |||||||||||||||||||||||| |||||| ||||||||| |
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| T |
4645869 |
aatatcactccattgatctccaatgtttccaacaattctgtatccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttacca |
4645968 |
T |
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| Q |
116 |
tgatata |
122 |
Q |
| |
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||||||| |
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| T |
4645969 |
tgatata |
4645975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 196 - 331
Target Start/End: Complemental strand, 23681528 - 23681394
Alignment:
| Q |
196 |
taataattgacatgcccctcacacatcacctaatatgtccnnnnnnnnngtagttacctaatatgtccttttcaggttttatatg-tcagcaata-attc |
293 |
Q |
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|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||| |||| |
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| T |
23681528 |
taataattgacatgtccctcaca--tcacctaatatgtcctttttttt-gtagttacctaatatgtccttttcagtttgaatatggtcagcaatttattc |
23681432 |
T |
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| Q |
294 |
acctagtttatttatttttactgaaataattcacctag |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
23681431 |
acctagtttatttatttttactgaaataattcacctag |
23681394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 566 - 661
Target Start/End: Original strand, 4646346 - 4646441
Alignment:
| Q |
566 |
tcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatcttaacaccaagatttaccagtttgttgtacaattttt |
661 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||| | ||||||| | || ||| ||||||||||||| |
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| T |
4646346 |
tcaagttcttagctgtaatttctttctgtttgagtggtctgcctgttaagaacgcaatcttgataccaagagacaacaatttattgtacaattttt |
4646441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 41872254 - 41872375
Alignment:
| Q |
29 |
tggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatataattctg |
128 |
Q |
| |
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|||||||| |||||||||| ||| | |||||||||| || |||||||||||||| || ||||||||| |||||| |||||||||||||||| | || |
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| T |
41872254 |
tggtctcctatgtttccaatgattttgtatccttcttcctccagcttctttctctctgacgatttgtatgtaactgctgttttaccatgatatattgatg |
41872353 |
T |
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| Q |
129 |
tatccctgcaaccataaatttg |
150 |
Q |
| |
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|||||||| |||| ||||||| |
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| T |
41872354 |
tatccctgagaccacaaatttg |
41872375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 636
Target Start/End: Original strand, 41872538 - 41872660
Alignment:
| Q |
514 |
tagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgtta |
613 |
Q |
| |
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|||||||||||||| ||||||| ||||| ||| ||||||||||| | |||| ||||| ||||| |||| |||||||||| || |||||| |||| |
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| T |
41872538 |
tagaaaacttacttgcaaattagtttttcccgtgtatggtagccagcaagtctcaaattcttggctgttatgttcttctgtttgtttgctcttccagtta |
41872637 |
T |
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| Q |
614 |
agaatgcaatcttaacaccaaga |
636 |
Q |
| |
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||||| ||||||| | ||||||| |
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| T |
41872638 |
agaatacaatcttgataccaaga |
41872660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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